CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21440687

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G107890.2	Barley	cytosol	100.0	100.0
GRMZM5G806488_P01	Maize	plastid	100.0	100.0
GRMZM5G844628_P01	Maize	cytosol	100.0	100.0
HORVU0Hr1G031420.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G034730.2	Barley	cytosol	100.0	100.0
HORVU0Hr1G034770.2	Barley	cytosol	100.0	100.0
HORVU2Hr1G121660.2	Barley	cytosol	100.0	100.0
Bra041145.1-P	Field mustard	cytosol	100.0	100.0
HORVU6Hr1G049520.2	Barley	cytosol	100.0	100.0
HORVU2Hr1G121420.2	Barley	cytosol	99.36	99.36
HORVU5Hr1G004530.2	Barley	cytosol	98.72	98.72
HORVU5Hr1G064870.2	Barley	cytosol	98.72	98.72
HORVU0Hr1G034830.1	Barley	cytosol	96.15	98.68
HORVU4Hr1G048750.1	Barley	cytosol	25.0	97.5
HORVU6Hr1G046780.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	23.72	92.5
CDY44968	Canola	cytosol	22.44	87.5
HORVU5Hr1G032310.3	Barley	cytosol	83.97	83.97
PGSC0003DMT400088629	Potato	mitochondrion	70.51	83.97
PGSC0003DMT400030854	Potato	mitochondrion	77.56	83.45
Solyc09g061450.1.1	Tomato	plastid	39.1	46.56
HORVU4Hr1G016750.1	Barley	cytosol	42.31	42.04

Protein Annotations

Gene3D:1.10.455.10	MapMan:17.7.2.2.7	EntrezGene:4525061	EntrezGene:4525104	EnsemblPlants:AGP50799	EnsemblPlantsGene:AGP50799
ProteinID:AGP50799	ProteinID:AGP50799.1	EMBL:AK356503	ProteinID:AMA20290.1	ProteinID:AMA20304.1	GO:F2CXZ9
UniProt:F2CXZ9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR036823
ENA:KC912687.1:CDS:complement(88786..89256)	HAMAP:MF_00480_B	PFAM:PF00177	PIRSF:PIRSF002122	ScanProsite:PS00052	PANTHER:PTHR11205
PANTHER:PTHR11205:SF19	InterPro:Ribosomal_S5/S7	InterPro:Ribosomal_S7_CS	InterPro:Ribosomal_S7_bac/org-type	InterPro:Ribosomal_S7_dom	InterPro:Ribosomal_S7_dom_sf
SUPFAM:SSF47973	TIGRFAMs:TIGR01029	UniParc:UPI00001349D6	RefSeq:YP_874697.1	RefSeq:YP_874710.1	:

Description

rps7ribosomal protein S7

Coordinates

chrPt:-:88786..89256

Molecular Weight (calculated)

17659.9 Da

IEP (calculated)

12.335

GRAVY (calculated)

-0.683

Length

156 amino acids

Sequence
(BLAST)

001: MSRRGTAEKR TAKSDPIFRN RLVNMVVNRI MKDGKKSLAY QILYRAVKKI QQKTETNPLL VLRQAIRRVT PNIGVKTRRN KKGSTRKVPI EIGSKQGRAL
101: AIRWLLEASQ KRPGRNMAFK LSSELVDAAK GSGGAIRKKE ATHRMAEANR ALAHFR

Best Arabidopsis Sequence Match ( ATCG01240.1 )
(BLAST)

001: MSRRGTAEEK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRALKKI QQKTETNPLS VLRQAIRGVT PDIAVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLGASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR

Arabidopsis Description

RPS7-A30S ribosomal protein S7, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q6KGZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.