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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CAA33919 Rice cytosol 100.0 100.0
Bra041145.1-P Field mustard cytosol 99.36 99.36
EES09873 Sorghum cytosol 97.44 97.44
TraesCS1D01G179100.1 Wheat cytosol 96.79 96.79
TraesCS1B01G406600.1 Wheat cytosol 95.51 96.13
Os09t0110750-00 Rice cytosol 25.64 90.91
CDY44968 Canola cytosol 21.79 85.0
PGSC0003DMT400088629 Potato mitochondrion 69.87 83.21
PGSC0003DMT400030854 Potato mitochondrion 76.92 82.76
KRH21558 Soybean mitochondrion 23.08 47.37
Solyc09g061450.1.1 Tomato plastid 38.46 45.8
Protein Annotations
Gene3D:1.10.455.10EntrezGene:107278968EntrezGene:107280672EntrezGene:107281766EntrezGene:107282054MapMan:17.7.2.2.7
EntrezGene:3131444EntrezGene:3131445ProteinID:AAS46151.1ProteinID:AAS46164.1ProteinID:AJC99359.1ProteinID:AJC99375.1
ProteinID:AJC99446.1ProteinID:AJC99462.1ProteinID:BAC84682.1ProteinID:BAD05511.1ProteinID:CAA29827.1ProteinID:CAA33919.1
EnsemblPlants:CAA33942EnsemblPlantsGene:CAA33942ProteinID:CAA33942ProteinID:CAA33942.1GO:GO:0000028GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0003735GO:GO:0005198GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987
GO:GO:0015935GO:GO:0016043GO:GO:0019538GO:GO:0019843InterPro:IPR036823HAMAP:MF_00480_B
RefSeq:NP_039433.1RefSeq:NP_039458.1UniProt:P0C491PFAM:PF00177PIRSF:PIRSF002122ScanProsite:PS00052
PANTHER:PTHR11205PANTHER:PTHR11205:SF19UniProt:Q6YTM6Reactome:R-HSA-156827Reactome:R-HSA-156902Reactome:R-HSA-1799339
Reactome:R-HSA-192823Reactome:R-HSA-2408557Reactome:R-HSA-6791226Reactome:R-HSA-72649Reactome:R-HSA-72689Reactome:R-HSA-72695
Reactome:R-HSA-72702Reactome:R-HSA-72706Reactome:R-HSA-72764Reactome:R-HSA-975956Reactome:R-HSA-975957InterPro:Ribosomal_S5/S7
InterPro:Ribosomal_S7_CSInterPro:Ribosomal_S7_bac/org-typeInterPro:Ribosomal_S7_domInterPro:Ribosomal_S7_dom_sfSUPFAM:SSF47973TIGRFAMs:TIGR01029
UniParc:UPI00001349DCRefSeq:XP_015612724.1RefSeq:XP_015635025.1RefSeq:XP_015646874.1RefSeq:XP_015649752.1SEG:seg
Description
rps7ribosomal protein S7
Coordinates
chrPt:-:87944..88414
Molecular Weight (calculated)
17629.9 Da
IEP (calculated)
12.335
GRAVY (calculated)
-0.680
Length
156 amino acids
Sequence
(BLAST)
001: MSRRGTAEKR TAKSDPIFRN RLVNMVVNRI MKDGKKSLAY QILYRAVKKI QQKTETNPLL VLRQAIRRVT PNIGVKTRRN KKGSTRKVPI EIGSKQGRAL
101: AIRWLLEASQ KRPGRNMAFK LSSELVDAAK GGGGAIRKKE ATHRMAEANR ALAHFR
Best Arabidopsis Sequence Match ( ATCG01240.1 )
(BLAST)
001: MSRRGTAEEK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRALKKI QQKTETNPLS VLRQAIRGVT PDIAVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLGASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR
Arabidopsis Description
RPS7-A30S ribosomal protein S7, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q6KGZ1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.