Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
26668332
nucleus: 26668332 plasma membrane: 26668332 |
gfp PMID:
26668332
doi
Plant Genetic Engineering Laboratory (G.S., Y.T., J.R.B.) and Centre for Integrative Legume Research (S.H., J.B.), School of Agriculture and Food Sciences, University of Queensland, Brisbane, Queensland 4072, Australia; andInstituto de Horticultura Subtropical y Mediterranea La Mayora, Consejo Superior de Investigaciones Científicas, Universidad de Malaga, Experimental Station La Mayora, 29750 Algarrobo-Costa, Malaga, Spain (C.L.-E.) j.botella@uq.edu.au., Plant Genetic Engineering Laboratory (G.S., Y.T., J.R.B.) and Centre for Integrative Legume Research (S.H., J.B.), School of Agriculture and Food Sciences, University of Queensland, Brisbane, Queensland 4072, Australia; andInstituto de Horticultura Subtropical y Mediterranea La Mayora, Consejo Superior de Investigaciones Científicas, Universidad de Malaga, Experimental Station La Mayora, 29750 Algarrobo-Costa, Malaga, Spain (C.L.-E.).
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG88883 | Soybean | cytosol | 28.21 | 49.25 |
| Solyc08g005950.2.1 | Tomato | cytosol | 51.28 | 47.24 |
| VIT_04s0008g03160.t01 | Wine grape | nucleus, plastid | 44.44 | 40.94 |
| GSMUA_Achr9P14200_001 | Banana | nucleus | 38.46 | 39.13 |
| KRH16102 | Soybean | nucleus | 41.88 | 38.89 |
| KRH04991 | Soybean | cytosol | 41.03 | 36.64 |
| Solyc09g082940.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 30.77 | 36.36 |
| GSMUA_Achr8P23810_001 | Banana | nucleus | 34.19 | 34.78 |
| TraesCS6A01G107800.1 | Wheat | nucleus | 34.19 | 28.37 |
| TraesCS6D01G095700.1 | Wheat | nucleus | 35.04 | 28.28 |
| TraesCS6B01G136400.1 | Wheat | nucleus | 34.19 | 27.4 |
| Zm00001d015211_P001 | Maize | nucleus | 36.75 | 26.54 |
| Os02t0137800-01 | Rice | nucleus | 32.48 | 25.33 |
| EES04487 | Sorghum | nucleus | 33.33 | 22.81 |
Protein Annotations
| EnsemblPlants:Solyc12g096270.1.1 | EnsemblPlantsGene:Solyc12g096270.1 | ncoils:Coil | PANTHER:PTHR35129 | PANTHER:PTHR35129:SF1 | SEG:seg |
| UniParc:UPI0002769BAE | UniProt:K4DHA0 | MapMan:26.8.1.1.2.3 | MapMan:27.6.2.3 | : | : |
Description
No Description!
Coordinates
chr12:-:65267434..65268739
Molecular Weight (calculated)
13047.5 Da
IEP (calculated)
6.250
GRAVY (calculated)
-0.335
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSSSSPAS RELDEVQTDL PSSVRSASRI RAPNNMVMGK HRLAAAISAL NQQINIIQEE LDQLDSFGEA SLVCRELVSS VELIPDALLP VTRGPINVHL
101: DRWFHGVNDS RRNKRWI
101: DRWFHGVNDS RRNKRWI
001: MEGKSRFESE RERLRRQFKL VRTKTRLSLT LSDLRPASER MREETVVYEQ EESVSHGGGK HRILAELARV EQEVAFLEKE LKEVENTDIV STVCEELLSV
101: IEKGPDPLLP LTNGPLNLGW DRWFEGPNGG EGCRCLIL
101: IEKGPDPLLP LTNGPLNLGW DRWFEGPNGG EGCRCLIL
Arabidopsis Description
AGG1Ggamma-subunit 1 [Source:TAIR;Acc:AT3G63420]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.