Factsheet for TraesCS1A01G233200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 3
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	endoplasmic reticulum, golgi
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G249800.1	Wheat	endoplasmic reticulum	100.0	100.0
TraesCS1D01G238300.1	Wheat	endoplasmic reticulum	99.44	99.44
TraesCS5A01G455600.1	Wheat	endoplasmic reticulum	95.0	95.0
Os05t0297900-01	Rice	plasma membrane	92.22	92.22
EES19438	Sorghum	endoplasmic reticulum	90.56	90.56
Zm00001d009866_P004	Maize	endoplasmic reticulum	90.0	90.0
Zm00001d037926_P001	Maize	endoplasmic reticulum	90.0	90.0
EES16720	Sorghum	plasma membrane	89.44	89.44
GSMUA_Achr2P06860_001	Banana	endoplasmic reticulum	86.67	86.67
HORVU1Hr1G057530.2	Barley	endoplasmic reticulum, plasma membrane, plastid	98.33	82.71
GSMUA_Achr8P30160_001	Banana	plasma membrane	78.89	78.89
TraesCS6A01G333000.2	Wheat	extracellular, golgi	40.56	50.34
TraesCS6A01G334600.1	Wheat	golgi	44.44	47.34

Protein Annotations

MapMan:18.10.1.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006465	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538
InterPro:LexA/Signal_pep-like_sf	PFAM:PF00717	PRINTS:PR00728	PANTHER:PTHR10806	PANTHER:PTHR10806:SF16	InterPro:Peptidase_S24_S26A/B/C
InterPro:Peptidase_S26B	SUPFAM:SSF51306	TIGRFAMs:TIGR02228	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G233200	EnsemblPlants:TraesCS1A01G233200.1
TIGR:cd06530	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:407114639..407116995

Molecular Weight (calculated)

20024.9 Da

IEP (calculated)

7.889

GRAVY (calculated)

0.294

Length

180 amino acids

Sequence
(BLAST)

001: MGFIGDQVES IRSMQVRQVV TQIISLGMIV TSALIIWKGL MVATGSESPV VVVLSGSMEP GFKRGDILFL HMSKEPIRTG EIVVFNIDGR EIPIVHRVIK
101: VHERQESGEV DILTKGDNNF GDDRLLYAQG QLWLQKHHIM GRAVGYLPYV GWVTIVMTEK PIIKYLLIGA LGLLVITSKE

Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)

001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Arabidopsis Description

Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.