Factsheet for TraesCS1A01G253600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G253200.1	Wheat	plasma membrane	99.22	98.97
TraesCS1B01G264600.1	Wheat	plasma membrane	98.71	98.45
HORVU1Hr1G061140.3	Barley	golgi, mitochondrion, plasma membrane	98.58	92.36
EES00707	Sorghum	plasma membrane	89.39	89.28
Os01t0337500-00	Rice	plasma membrane	88.62	88.62
Zm00001d009222_P001	Maize	plasma membrane	89.78	86.86
VIT_14s0060g01280.t01	Wine grape	golgi, plasma membrane, vacuole	76.33	77.73
TraesCS7A01G141300.2	Wheat	plasma membrane	74.0	76.78
PGSC0003DMT400007173	Potato	plasma membrane	75.42	76.61
GSMUA_Achr8P06450_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	75.03	75.82
KRG90549	Soybean	endoplasmic reticulum, plasma membrane, vacuole	74.64	75.62
Solyc01g100390.2.1	Tomato	nucleus, plastid, unclear	74.39	75.56
TraesCS7A01G517700.2	Wheat	golgi	75.55	75.35
TraesCS1A01G107200.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	73.48	73.29
KRH33828	Soybean	endoplasmic reticulum	66.49	71.29

Protein Annotations

KEGG:00190+3.6.1.1	MapMan:24.1.4.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009678	GO:GO:0016020	GO:GO:0016787
GO:GO:1902600	HAMAP:MF_01129	PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998
PANTHER:PTHR31998:SF9	TIGRFAMs:TIGR01104	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G253600	EnsemblPlants:TraesCS1A01G253600.1	SEG:seg

Description

No Description!

Coordinates

chr1A:-:445509100..445524660

Molecular Weight (calculated)

79983.1 Da

IEP (calculated)

6.597

GRAVY (calculated)

0.573

Length

773 amino acids

Sequence
(BLAST)

001: MGFSVADAVI PACAVVGIAF ALWQWFLVAK VKVSAYAPAG NGVHGRPVFR TEDEEDAGIG GGGGGESDDE EDGGDGPAAV ARCAEIQNAI SVGANSFLFT
101: QYKYLAAFTV IFAVVIFLFL GSVHRFSTAS QPCQYTKGKT CKPALANAVF TTMAFLLGAV TSVVSGFLGM RIATFANART TLEARRGIGA AFATAFRSGA
201: VMGFLLSSLG LLVLYVAIKL FGLYYHDDWE GLYESITGYG LGGSSMALFG RVGGGIYTKA ADVGADLVGK VERNIPEDDP RNPAVIADNV GDNVGDIAGM
301: GSDLFGSYAE STCAALFVAS ISSFGADHDF AAVCYPLLIS SAGLVVCLVT TLFATDFFKV KTVRGVAPAL KLQLIISTAL MTVAALVVTF AALPAKFTMF
401: DFGEQKQVKN WHVFFCVAIG LWAGLAIGFT TEYFTSNAYS PVRDVADSCR TGAATNVIFG LALGYKSVIV PVLAIALSIY VSFTLASIYG IAIAALGMLS
501: TVATGLAIDA YGPISDNAGG IAEMAGMSRR IRQRTDALDA AGNTTAAIGK GFAIGSAALV SLALFGAFVS RAGVTVINVL SPKVFAGMLA GGMLPYWFSA
601: MTMKSVGSAA LKMVEEVRRQ FSTIPGLMEG RATPDYASCV RISTDASLRE MMPPGALVLL APLVVGTFFG VHTLAGLLAG ALVSGVQVAI SASNSGGAWD
701: NAKKYIEAGA SEHAKSLGPK GSEAHKAAVI GDTIGDPLKD TSGPSLNILI KLMAVESLVF APFFAAHGGL IIK

Best Arabidopsis Sequence Match ( AT1G15690.1 )
(BLAST)

001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF

Arabidopsis Description

AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.