Factsheet for Solyc01g100390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

cytosol 1
vacuole 6
extracellular 4
endoplasmic reticulum 5
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid, unclear
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117
nucleus: 25464976
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007173	Potato	plasma membrane	97.63	97.63
VIT_14s0060g01280.t01	Wine grape	golgi, plasma membrane, vacuole	87.52	87.75
KRG90549	Soybean	endoplasmic reticulum, plasma membrane, vacuole	86.33	86.11
GSMUA_Achr8P06450_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	82.92	82.48
Solyc06g068240.2.1	Tomato	plastid	82.79	82.14
Solyc03g117480.2.1	Tomato	nucleus, unclear	82.39	81.75
Solyc07g007600.2.1	Tomato	nucleus, plastid	81.47	81.05
Solyc12g009840.1.1	Tomato	nucleus, unclear	81.87	81.01
KRH33828	Soybean	endoplasmic reticulum	76.48	80.72
HORVU1Hr1G023100.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	77.0	76.8
TraesCS1B01G124600.1	Wheat	golgi	76.74	76.44
TraesCS1D01G107600.1	Wheat	golgi	76.61	76.21
TraesCS1A01G107200.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	76.87	75.48
Os01t0337500-00	Rice	plasma membrane	76.48	75.29
EES00707	Sorghum	plasma membrane	75.95	74.68
Zm00001d037576_P001	Maize	plastid	75.03	74.64
TraesCS1A01G253600.1	Wheat	golgi	75.56	74.39
EES19071	Sorghum	plasma membrane	75.16	74.09
TraesCS1B01G264600.1	Wheat	plasma membrane	75.3	73.94
TraesCS1D01G253200.1	Wheat	plasma membrane	75.16	73.81
Os05t0156900-01	Rice	plasma membrane	74.64	73.77
Zm00001d009222_P001	Maize	plasma membrane	75.95	72.34
HORVU1Hr1G061140.3	Barley	golgi, mitochondrion, plasma membrane	75.16	69.33
Solyc04g071880.2.1	Tomato	nucleus, plastid	36.79	35.0

Protein Annotations

KEGG:00190+3.6.1.1	MapMan:24.1.4.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009678	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0055085	GO:GO:1902600	UniProt:K4B173	HAMAP:MF_01129
PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998	PANTHER:PTHR31998:SF24	EnsemblPlantsGene:Solyc01g100390.2
EnsemblPlants:Solyc01g100390.2.1	TIGRFAMs:TIGR01104	TMHMM:TMhelix	UniParc:UPI000276751A	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:90434292..90439389

Molecular Weight (calculated)

79982.3 Da

IEP (calculated)

4.760

GRAVY (calculated)

0.525

Length

761 amino acids

Sequence
(BLAST)

001: MGLMSEALTQ ILIPLAAIIG IGFALLQWVL VSKIRVSSGS KLESEYNNKL IEEDEQEEGI DSDDVVAKCA DIQKAISQGA TSFLFTEYKY LGIFMVVFGA
101: IIFLFLGSVK SFSTESEPCT FNKENICKPA LANAFFTTIA FLLGGLTSAL SGFLGMKIAT YANARTTLEA RKSIGKAFIT AFRSGAVMGF LLAANGLLVL
201: YISINLFKLY YGDDWEGLYE SITGYGLGGS SMALFGRVGG GIYTKAADVG ADLVGKVERN IPEDDPRNPA VIADNVGDNV GDIAGMGSDL FGSYAESSCA
301: ALFVASISSI GSNHDYSAMS YPLIISSMGI LICLITTLIA TDMFEIKNVT EIEPSLKRQL LISTVLMTVG IAFVNFFALP SEFTIFDFGS EKVVKNWHLF
401: FCVSIGLWAG LVIGYTTEYY TSSAYSPVQE VADSCKTGAA TNVIFGLALG YKSVIIPIFA IAASIYVSFS LAAMYGIAVA ALGMLSTIAT GLAIDAYGPI
501: SDNAGGIAEM AGMSHSIRER TDALDAAGNT TAAIGKGFAI GSAALVSLAL FGAYVSRAGI KTVDVLSPKV FIGLIVGAML PYWFSAMTMK SVGSAALKMV
601: EEVRRQFNSI PGLMEGTAKP DYATCVKIST DASLKEMIPP GALVMLTPLI AGTFFGVETL AGVLAGSLVS GVQVAISASN TGGSWDNAKK YIEAGATEHA
701: RSLGPKGSDA HKAAVIGDTV GDPLKDTSGP SLNILIKLMA VESLVFAPFF ATHGGLLFKL L

Best Arabidopsis Sequence Match ( AT1G15690.1 )
(BLAST)

001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF

Arabidopsis Description

AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.