Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 nucleus: 26228564 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G107600.1 | Wheat | golgi | 99.21 | 99.08 |
| HORVU1Hr1G023100.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 98.3 | 98.43 |
| TraesCS1A01G107200.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 99.48 | 98.06 |
| Zm00001d037576_P001 | Maize | plastid | 86.39 | 86.27 |
| EES19071 | Sorghum | plasma membrane | 85.86 | 84.97 |
| Os05t0156900-01 | Rice | plasma membrane | 84.95 | 84.29 |
| GSMUA_Achr8P06450_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 78.01 | 77.91 |
| VIT_14s0060g01280.t01 | Wine grape | golgi, plasma membrane, vacuole | 77.09 | 77.6 |
| PGSC0003DMT400007173 | Potato | plasma membrane | 77.09 | 77.4 |
| Solyc01g100390.2.1 | Tomato | nucleus, plastid, unclear | 76.44 | 76.74 |
| KRG90549 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 75.26 | 75.36 |
| TraesCS7B01G042600.1 | Wheat | golgi | 74.08 | 74.28 |
| TraesCS7B01G433800.1 | Wheat | plastid, unclear | 75.13 | 73.97 |
| TraesCS1B01G264600.1 | Wheat | plasma membrane | 74.21 | 73.16 |
| KRH33828 | Soybean | endoplasmic reticulum | 65.97 | 69.9 |
| TraesCS6B01G376400.1 | Wheat | golgi | 37.3 | 35.67 |
Protein Annotations
| KEGG:00190+3.6.1.1 | MapMan:24.1.4.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004427 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009678 | GO:GO:0016020 | GO:GO:0016787 |
| GO:GO:1902600 | HAMAP:MF_01129 | PFAM:PF03030 | PIRSF:PIRSF001265 | InterPro:PPase-energised_H-pump | PANTHER:PTHR31998 |
| PANTHER:PTHR31998:SF25 | TIGRFAMs:TIGR01104 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1B01G124600 | EnsemblPlants:TraesCS1B01G124600.1 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:151075868..151079585
Molecular Weight (calculated)
79264.4 Da
IEP (calculated)
6.257
GRAVY (calculated)
0.573
Length
764 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIGTAGAE VLIPLAAVIG IAFAVFQWYA VAKVPVPSHD GEDGGGAAQK GRSGHDESAE DGVDYRQVEA RCAEIQHAIS IGATSFLFTE YRYLAVFMAG
101: FAVVIFMFLG SAQRFSTRPE PCTYDPARMC RPALANAAFS MIAFLLGALT SVMSGYLGMR VATFANARTA LEARRGVGRA FVVAFRSGAA MGFLLASSAL
201: FVLYVAINLF GVYYGDDWGG LYESITGYGL GGSSMALFGR VGGGIYTKAA DVGADLVGKV ERNIPEDDPR NPAVIADNVG DNVGDIAGMG SDLFGSYAES
301: SCAALFVASI SSFGTEHNFA AMMYPLLISA MGIVVCLATT VVATDLAEVK TVEEIGPALK RQILISTVLM TVGIAIVSFL VLPHSFTLFD FGRRKLVKNW
401: YLFICVSAGL WAGLVIGYVT EYFTSNAYRP VQAVANSCRT GAATNVIFGL AVGYKSVIVP IFAIATAIYA SFRLAAMYGI ALAALGMLST IATGLSIDAY
501: GPISDNAGGI AEMSGMPHVV RERTDALDAA GNTTAAIGKG FAIGSAALVS LALFGAYVSR AGVAAVDVLS PRVFAGLLAG AMLPYWFSAM TMRSVGSAAL
601: AMVEEVRRQF DSIPGLMEGT AKPDYATCVK ISTDASLKKM LAPGALVMLS PLVAGTLFGT ETLAGLLAGA LVSGVQVAIS ASNSGGAWDN AKKYIEAGAS
701: AEARALGPKG SDAHKAAVIG DTIGDPLKDT SGPSLNILIK LMAVEALVFA PFFAAHGGLI FKHL
101: FAVVIFMFLG SAQRFSTRPE PCTYDPARMC RPALANAAFS MIAFLLGALT SVMSGYLGMR VATFANARTA LEARRGVGRA FVVAFRSGAA MGFLLASSAL
201: FVLYVAINLF GVYYGDDWGG LYESITGYGL GGSSMALFGR VGGGIYTKAA DVGADLVGKV ERNIPEDDPR NPAVIADNVG DNVGDIAGMG SDLFGSYAES
301: SCAALFVASI SSFGTEHNFA AMMYPLLISA MGIVVCLATT VVATDLAEVK TVEEIGPALK RQILISTVLM TVGIAIVSFL VLPHSFTLFD FGRRKLVKNW
401: YLFICVSAGL WAGLVIGYVT EYFTSNAYRP VQAVANSCRT GAATNVIFGL AVGYKSVIVP IFAIATAIYA SFRLAAMYGI ALAALGMLST IATGLSIDAY
501: GPISDNAGGI AEMSGMPHVV RERTDALDAA GNTTAAIGKG FAIGSAALVS LALFGAYVSR AGVAAVDVLS PRVFAGLLAG AMLPYWFSAM TMRSVGSAAL
601: AMVEEVRRQF DSIPGLMEGT AKPDYATCVK ISTDASLKKM LAPGALVMLS PLVAGTLFGT ETLAGLLAGA LVSGVQVAIS ASNSGGAWDN AKKYIEAGAS
701: AEARALGPKG SDAHKAAVIG DTIGDPLKDT SGPSLNILIK LMAVEALVFA PFFAAHGGLI FKHL
001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF
Arabidopsis Description
AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.