Factsheet for TraesCS6B01G376400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G080600.1	Wheat	plasma membrane	99.87	99.87
TraesCS6D01G326300.1	Wheat	plasma membrane	99.62	99.62
HORVU6Hr1G083160.1	Barley	plasma membrane	99.62	99.62
Os02t0537900-01	Rice	plasma membrane	93.49	93.49
Zm00001d030996_P011	Maize	plasma membrane	92.49	92.49
EES17335	Sorghum	plasma membrane	92.12	92.12
CDY70253	Canola	golgi, plasma membrane	28.54	91.2
Zm00001d041420_P003	Maize	plasma membrane	91.61	90.71
CDY70021	Canola	golgi, plasma membrane	27.66	90.57
VIT_09s0054g00700.t01	Wine grape	plasma membrane	87.48	87.38
KRH44688	Soybean	plasma membrane	86.98	86.77
KRH46977	Soybean	endoplasmic reticulum	86.73	86.52
Solyc04g071880.2.1	Tomato	nucleus, plastid	86.23	86.12
PGSC0003DMT400064558	Potato	plasma membrane	82.48	85.81
AT1G16780.1	Thale cress	golgi, mitochondrion, plasma membrane	85.48	85.16
Bra008386.1-P	Field mustard	plasma membrane	85.23	84.81
CDX88491	Canola	plasma membrane	85.11	84.79
AT1G78920.2	Thale cress	plasma membrane	84.98	84.66
Bra035076.1-P	Field mustard	plasma membrane	84.98	84.66
CDX87422	Canola	plasma membrane	84.98	84.66
GSMUA_Achr5P13160_001	Banana	plasma membrane	85.86	82.85
CDY69568	Canola	plasma membrane	33.79	78.03
CDY69601	Canola	plasma membrane	33.54	77.46
GSMUA_Achr1P01170_001	Banana	cytosol, plasma membrane, vacuole	26.41	70.33
TraesCS1B01G264600.1	Wheat	plasma membrane	36.55	37.68
TraesCS1B01G124600.1	Wheat	golgi	35.67	37.3
TraesCS7B01G042600.1	Wheat	golgi	34.92	36.61
TraesCS7B01G433800.1	Wheat	plastid, unclear	35.04	36.08

Protein Annotations

KEGG:00190+3.6.1.1	MapMan:24.1.4.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009678	GO:GO:0016020	GO:GO:0016787
GO:GO:1902600	HAMAP:MF_01129	PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998
PANTHER:PTHR31998:SF11	TIGRFAMs:TIGR01104	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G376400	EnsemblPlants:TraesCS6B01G376400.1	SEG:seg

Description

No Description!

Coordinates

chr6B:+:651407344..651415041

Molecular Weight (calculated)

84847.4 Da

IEP (calculated)

5.592

GRAVY (calculated)

0.597

Length

799 amino acids

Sequence
(BLAST)

001: MMESEMEKGR PYQEKPRTFS TVRSKSSIPL VFRVLMKINP RALIVLLLLV VCGVFYLGAS TSPIIVFVFC ICTLSLFFSL YLTKWVLAKD EGPPEMSEIS
101: DAIRDGAEGF FRTQYGAISK MACILALVIL FIYLFRTTTP QQEASGLGRT TSAYITVIAF LLGAVCSGLA GYVGMWVSVR ANVRVSSAAR RSAREALQIA
201: VRAGGFSAIV VVGMAVFGVA LLYATFYVWL GVDSPDSMKV TDLPLLLVGY GFGASFVALF AQLGGGIYTK AADVGADLVG KVEQGIPEDD PRNPAVIADL
301: VGDNVGDCAA RGADLFESIA AEIISAMILG ATMAQRCKIE DPSGFILFPL VVHSFDLVVS SVGILSIRGT RDSGLISPIE DPMAIMQKGY SITILLAVLT
401: FGGSTRWLLY TEQAPTAWFN FALCGLVGII TAYAFVWISK YYTDYKHEPV RLLALSSSTG HGTNIIAGVS LGMESTALPV LVISVAIISA FWLGRTCGLV
501: DELGNPTGGL FGTAVATMGM LSTAAYVLTM DMFGPIADNA GGIVEMSQQP ESVREITDIL DAVGNTTKAT TKGFAIGSAA LASFLLFSAY MDEVAAFAQL
601: PFKEVDIAIP EVFVGGLLGS MLIFLFSGWA CSAVGRTAQE VVTEVRRQFI ERPGIMDYKE KPDYGRCVAI VASASLREMI KPGALAILSP MAVGIIFRIL
701: GHATGQPLLG AKVVASMLMF ATVTGILMAL FLNTSGGAWD NAKKYIETGA LGGKGSEAHK AAITGDTVGD PFKDTAGPSI HVLIKMLATI TLVMAPIFL

Best Arabidopsis Sequence Match ( AT1G16780.1 )
(BLAST)

001: MMMDEDVEQA TLVSYSDKPR TFPDMRSKTY SPLIIRILRN LNVRALSVLL LLSFGGIFYM GARTSPIIVF VFVVCIISFM LSVYLTKWVL AKDEGPPEMV
101: QISDAIRDGA EGFLRTQYGT ISKMAFLLAF VILCIYLFRN LTPQQEASGL GRTMSAYITV AAFLLGALCS GIAGYVGMWV SVRANVRVSS AARRSAREAL
201: QIAVRAGGFS ALVVVGMAVI GIAILYSTFY VWLDVDSPGS MKVTDLPLLL VGYGFGASFV ALFAQLGGGI YTKGADVGAD LVGKVEHGIP EDDPRNPAVI
301: ADLVGDNVGD CAARGADLFE SIAAEIISAM ILGGTMAQKC KIEDPSGFIL FPLVVHSFDL VISSIGILSI KGTRNASVKS PVEDPMVVLQ KGYSLTIILA
401: VLTFGASTRW LLYTEQAPSA WLNFFMCGLV GIITAYVFVW ISRYYTDYKY EPVRTLALAS STGHGTNIIA GVSLGLESTA LPVLVISVAI ISAFWLGNTS
501: GLIDEKGNPT GGLFGTAVAT MGMLSTAAYV LTMDMFGPIA DNAGGIVEMS QQPESVREIT DVLDAVGNTT KATTKGFAIG SAALASFLLF SAYMDEVSAF
601: ANVSFKEVDI AIPEVFIGGL LGAMLIFLFS AWACAAVGRT AQEVVNEVRR QFIERPGIMD YKEKPDYGRC VAIVASSALR EMIKPGALAI ISPIAVGFVF
701: RILGYYTGQP LLGAKVVAAM LMFATVCGIL MALFLNTAGG AWDNAKKYIE TGALGGKGSD SHKAAVTGDT VGDPFKDTAG PSIHVLIKML ATITLVMAPI
801: FL

Arabidopsis Description

AVPL2Pyrophosphate-energized membrane proton pump 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWR2]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.