Factsheet for Solyc04g071880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 1
nucleus 1
golgi 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064558	Potato	plasma membrane	94.5	98.44
CDY70253	Canola	golgi, plasma membrane	28.5	91.2
CDY70021	Canola	golgi, plasma membrane	27.62	90.57
VIT_09s0054g00700.t01	Wine grape	plasma membrane	89.12	89.12
EES17335	Sorghum	plasma membrane	86.5	86.61
Os02t0537900-01	Rice	plasma membrane	86.5	86.61
Zm00001d030996_P011	Maize	plasma membrane	86.12	86.23
TraesCS6D01G326300.1	Wheat	plasma membrane	86.12	86.23
TraesCS6B01G376400.1	Wheat	golgi	86.12	86.23
TraesCSU01G080600.1	Wheat	plasma membrane	86.0	86.11
KRH46977	Soybean	endoplasmic reticulum	86.12	86.02
HORVU6Hr1G083160.1	Barley	plasma membrane	85.88	85.98
AT1G16780.1	Thale cress	golgi, mitochondrion, plasma membrane	86.0	85.79
KRH44688	Soybean	plasma membrane	85.88	85.77
AT1G78920.2	Thale cress	plasma membrane	85.25	85.04
CDX88491	Canola	plasma membrane	85.25	85.04
CDX87422	Canola	plasma membrane	85.12	84.91
Bra035076.1-P	Field mustard	plasma membrane	85.12	84.91
Bra008386.1-P	Field mustard	plasma membrane	85.12	84.81
Zm00001d041420_P003	Maize	plasma membrane	85.5	84.76
GSMUA_Achr5P13160_001	Banana	plasma membrane	85.0	82.13
CDY69568	Canola	plasma membrane	34.75	80.35
CDY69601	Canola	plasma membrane	34.5	79.77
GSMUA_Achr1P01170_001	Banana	cytosol, plasma membrane, vacuole	26.5	70.67
Solyc01g100390.2.1	Tomato	nucleus, plastid, unclear	35.0	36.79
Solyc12g009840.1.1	Tomato	nucleus, unclear	35.12	36.54
Solyc07g007600.2.1	Tomato	nucleus, plastid	34.88	36.47
Solyc06g068240.2.1	Tomato	plastid	34.75	36.25
Solyc03g117480.2.1	Tomato	nucleus, unclear	34.62	36.11

Protein Annotations

KEGG:00190+3.6.1.1	MapMan:24.1.4.2	EMBL:AB300443	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009678	GO:GO:0015992
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0055085	GO:GO:1902600	UniProt:K4BTH5
HAMAP:MF_01129	PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998	PANTHER:PTHR31998:SF11
EnsemblPlantsGene:Solyc04g071880.2	EnsemblPlants:Solyc04g071880.2.1	TIGRFAMs:TIGR01104	TMHMM:TMhelix	UniParc:UPI0002766BFF	SEG:seg

Description

Vacuolar-type H+-translocating inorganic pyrophosphatase [Source:UniProtKB/TrEMBL;Acc:K4BTH5]

Coordinates

chr4:+:58893473..58903303

Molecular Weight (calculated)

84960.1 Da

IEP (calculated)

5.289

GRAVY (calculated)

0.556

Length

800 amino acids

Sequence
(BLAST)

001: MDDEMEGGNL GPYQERPRTF PSMKSKAYAP WIFRVLVRIN SRILLMLLLV CFGAIFYIGA STSPILVFVF SVCIISFFVS IYLTKWVLAK DEGPPEMSEI
101: SDAIRDGAEG FFRTQYGTIS KMALLLGLAI LGIYLFRNIT PQQESSGLGR VTSAYITVAA FLFGALCSGV AGYVGMWVSV RANVRVSSAA RRSAREALQI
201: AVRAGGFSAL VVVGMAVMGV AILYAILYVW FGVDSTGTMK ATDLPLLLVG YGFGASFVAL FAQLGGGIFT KAADVGADLV GKVEQGIPED DPRNPAVIAD
301: LVGDNVGDCA ARGADLFESI AAEIISAMIL GGTMAQRCKI EDPSGFILFP LVVHSFDLVI SSVGIFSIRN KRDSGVIGTI EDPMKTLEKG YSVTIFLAVL
401: TFGLSTRWLL YTEQAPTAWL NFALCGLVGI VTAYVFVWIS KYYTDYKYEP VRTLALASST GHGTNIIAGV SLGLESTALP VLVISLAIVS AFWLGRTSGL
501: TDEAGNPTGG LFGTAVATMG MLSTAAYVLT MDMFGPIADN AGGIVEMSQQ PESVREITDV LDAVGNTTKA TTKGFAIGSA ALASFLLFSA YMDEVAAFAQ
601: EPFKQVDIAI PEVFVGGLLG SMLIFLFSAW ACAAVGRTAQ EVVNEVRRQF IERPGIMDYK EKPDYGRCVS IVASASLKEM IKPGALAIIS PTVAGVIFRI
701: LGYYTGHPLL GAKVVASMLM FATVSGILMA LFLNTAGGAW DNAKKYIETG ALGGKGSDTH KAAVTGDTVG DPFKDTAGPS LHVLIKMLAT ITLVMAPIFL

Best Arabidopsis Sequence Match ( AT1G16780.1 )
(BLAST)

001: MMMDEDVEQA TLVSYSDKPR TFPDMRSKTY SPLIIRILRN LNVRALSVLL LLSFGGIFYM GARTSPIIVF VFVVCIISFM LSVYLTKWVL AKDEGPPEMV
101: QISDAIRDGA EGFLRTQYGT ISKMAFLLAF VILCIYLFRN LTPQQEASGL GRTMSAYITV AAFLLGALCS GIAGYVGMWV SVRANVRVSS AARRSAREAL
201: QIAVRAGGFS ALVVVGMAVI GIAILYSTFY VWLDVDSPGS MKVTDLPLLL VGYGFGASFV ALFAQLGGGI YTKGADVGAD LVGKVEHGIP EDDPRNPAVI
301: ADLVGDNVGD CAARGADLFE SIAAEIISAM ILGGTMAQKC KIEDPSGFIL FPLVVHSFDL VISSIGILSI KGTRNASVKS PVEDPMVVLQ KGYSLTIILA
401: VLTFGASTRW LLYTEQAPSA WLNFFMCGLV GIITAYVFVW ISRYYTDYKY EPVRTLALAS STGHGTNIIA GVSLGLESTA LPVLVISVAI ISAFWLGNTS
501: GLIDEKGNPT GGLFGTAVAT MGMLSTAAYV LTMDMFGPIA DNAGGIVEMS QQPESVREIT DVLDAVGNTT KATTKGFAIG SAALASFLLF SAYMDEVSAF
601: ANVSFKEVDI AIPEVFIGGL LGAMLIFLFS AWACAAVGRT AQEVVNEVRR QFIERPGIMD YKEKPDYGRC VAIVASSALR EMIKPGALAI ISPIAVGFVF
701: RILGYYTGQP LLGAKVVAAM LMFATVCGIL MALFLNTAGG AWDNAKKYIE TGALGGKGSD SHKAAVTGDT VGDPFKDTAG PSIHVLIKML ATITLVMAPI
801: FL

Arabidopsis Description

AVPL2Pyrophosphate-energized membrane proton pump 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWR2]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.