Factsheet for Solyc03g117480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

cytosol 1
vacuole 5
extracellular 3
endoplasmic reticulum 4
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036847	Potato	plasma membrane	98.44	98.44
VIT_09s0002g07920.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	46.41	94.93
Solyc06g068240.2.1	Tomato	plastid	94.78	94.78
VIT_09s0002g07940.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	48.76	94.68
KRH47417	Soybean	nucleus	92.7	92.58
KRH44486	Soybean	endoplasmic reticulum	92.7	92.58
VIT_09s0002g07880.t01	Wine grape	extracellular	92.31	92.31
Solyc07g007600.2.1	Tomato	nucleus, plastid	89.96	90.2
CDX87313	Canola	endoplasmic reticulum, plasma membrane, vacuole	89.96	89.73
VIT_11s0118g00350.t01	Wine grape	plasma membrane	89.31	89.66
AT1G15690.1	Thale cress	plasma membrane	89.96	89.61
CDY39975	Canola	plasma membrane	89.83	89.6
Solyc12g009840.1.1	Tomato	nucleus, unclear	89.83	89.6
Bra035179.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	89.7	89.47
CDY36581	Canola	plasma membrane	89.83	89.36
CDX83972	Canola	plasma membrane	89.57	89.34
CDY33390	Canola	plasma membrane	89.7	89.23
CDX96835	Canola	plasma membrane	89.44	89.21
Bra026115.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	89.31	88.85
Bra016653.1-P	Field mustard	plasma membrane	89.05	88.82
KRH61103	Soybean	endoplasmic reticulum, plasma membrane	13.04	87.72
CDY53310	Canola	plasma membrane	90.22	86.28
VIT_09s0002g08010.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	28.68	84.94
Solyc01g100390.2.1	Tomato	nucleus, plastid, unclear	81.75	82.39
CDX81728	Canola	plasma membrane	90.35	59.03
Zm00001d041187_P002	Maize	cytosol, endoplasmic reticulum, golgi	10.82	51.88
Solyc04g071880.2.1	Tomato	nucleus, plastid	36.11	34.62

Protein Annotations

KEGG:00190+3.6.1.1	MapMan:24.1.4.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009678	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0055085	GO:GO:1902600	UniProt:K4BLQ0	HAMAP:MF_01129
PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998	PANTHER:PTHR31998:SF10	EnsemblPlantsGene:Solyc03g117480.2
EnsemblPlants:Solyc03g117480.2.1	TIGRFAMs:TIGR01104	TMHMM:TMhelix	UniParc:UPI00027676AB	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:66624199..66629058

Molecular Weight (calculated)

80738.4 Da

IEP (calculated)

4.976

GRAVY (calculated)

0.570

Length

767 amino acids

Sequence
(BLAST)

001: MGSALLPDLG TEIVIPVCAV VGIVFSLYQW YVVSRVKVSS ERGDTSPSNN NKNGYGDYLI EEEEGVNDQN VVAKCADIQN AISEGATSFL FTEYQYVGIF
101: MIAFAILIFL FLGSVEGFST KSQPCTYNKE KMCKPALATA IFSTISFLLG AITSVISGFL GMKIATYANA RTTLEARKGV GKAFIVAFRS GAVMGFLLAA
201: NGLLVLHITI NLFKLYYGDD WEGLFEAITG YGLGGSSMAL FGRVGGGIYT KAADVGADLV GKVERNIPED DPRNPAVIAD NVGDNVGDIA GMGSDLFGSY
301: AESSCAALVV ASISSFGIEH DFTSMCYPLL ISSMGILVCL ITTLFATDFF EIKAVKEIEP ALKHQLIIST ALMTIGIAIV TWTCLPSSFT IFNFGTQKVV
401: KNWELFLCVA VGLWAGLIIG FVTEYYTSNA YSPVQDVADS CRTGAATNVI FGLALGYKSV IIPIFAIAIA IFVSFSFAAM YGIAVAALGM LSTIATGLAI
501: DAYGPISDNA GGIAEMAGMS HRIRERTDAL DAAGNTTAAI GKGFAIGSAA LVSLALFGAF VSRAAISTVD VLTPKVFIGL IVGAMLPYWF SAMTMKSVGS
601: AALKMVEEVR RQFNTIPGLM EGHAKPDYAT CVKISTDASI KEMIPPGALV MLTPLIVGIF FGVETLSGVL AGALVSGVQI AISASNTGGA WDNAKKYIEA
701: GASEHARTLG PKGSEPHKAA VIGDTIGDPL KDTSGPSLNI LIKLMAVESL VFAPFFATHG GILFKIF

Best Arabidopsis Sequence Match ( AT1G15690.1 )
(BLAST)

001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF

Arabidopsis Description

AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.