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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • vacuole 5
  • extracellular 3
  • endoplasmic reticulum 4
  • plasma membrane 5
  • golgi 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, plastid, secretory
BaCelLo:cytosol
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44486 Soybean endoplasmic reticulum 99.74 99.74
PGSC0003DMT400073438 Potato endoplasmic reticulum, plasma membrane, vacuole 36.33 96.88
VIT_09s0002g07920.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 46.74 95.73
VIT_09s0002g07940.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 48.96 95.19
Solyc06g068240.2.1 Tomato plastid 93.23 93.35
VIT_09s0002g07880.t01 Wine grape extracellular 92.84 92.96
PGSC0003DMT400036847 Potato plasma membrane 92.71 92.83
Solyc03g117480.2.1 Tomato nucleus, unclear 92.58 92.7
KRH20199 Soybean nucleus 91.02 91.37
KRH03609 Soybean plasma membrane 89.32 90.98
VIT_11s0118g00350.t01 Wine grape plasma membrane 90.23 90.71
AT1G15690.1 Thale cress plasma membrane 89.84 89.61
KRH61103 Soybean endoplasmic reticulum, plasma membrane 13.28 89.47
CDX87313 Canola endoplasmic reticulum, plasma membrane, vacuole 89.58 89.47
CDY39975 Canola plasma membrane 89.32 89.21
Bra035179.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 89.32 89.21
CDY36581 Canola plasma membrane 89.19 88.85
CDY33390 Canola plasma membrane 89.06 88.72
CDX83972 Canola plasma membrane 88.8 88.69
CDX96835 Canola plasma membrane 88.54 88.43
Bra026115.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 88.67 88.33
Bra016653.1-P Field mustard plasma membrane 88.15 88.04
VIT_09s0002g08010.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 28.91 85.71
CDY53310 Canola plasma membrane 89.06 85.29
KRG90549 Soybean endoplasmic reticulum, plasma membrane, vacuole 80.86 81.39
KRH33828 Soybean endoplasmic reticulum 72.14 76.84
KRH71586 Soybean extracellular 11.2 61.43
CDX81728 Canola plasma membrane 89.19 58.35
Zm00001d041187_P002 Maize cytosol, endoplasmic reticulum, golgi 10.81 51.88
KRH46977 Soybean endoplasmic reticulum 37.24 35.71
KRH44688 Soybean plasma membrane 36.98 35.46
Protein Annotations
KEGG:00190+3.6.1.1EntrezGene:100803691MapMan:24.1.4.1EMBL:ACUP02004150EnsemblPlantsGene:GLYMA_07G028500GO:GO:0003674
GO:GO:0003824GO:GO:0004427GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0009678GO:GO:0015992GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0055085
GO:GO:1902600UniProt:I1KGY6EnsemblPlants:KRH47417ProteinID:KRH47417ProteinID:KRH47417.1HAMAP:MF_01129
PFAM:PF03030PIRSF:PIRSF001265InterPro:PPase-energised_H-pumpPANTHER:PTHR31998PANTHER:PTHR31998:SF10MetaCyc:PWY-7805
MetaCyc:PWY-7807TIGRFAMs:TIGR01104TMHMM:TMhelixUniParc:UPI00023391B2SEG:seg:
Description
hypothetical protein
Coordinates
chr7:-:2283512..2288259
Molecular Weight (calculated)
80741.6 Da
IEP (calculated)
5.253
GRAVY (calculated)
0.595
Length
768 amino acids
Sequence
(BLAST)
001: MGAALLSELA TEIVVPACAV IGIVFSLVQW FLVSRVKLTP DRNGTTSSPR NNKNGYGDFL IEEEEGINDH SVVVKCAEIQ NAISEGATSF LFTEYQYVGI
101: FMVAFAILIF LFLGSVEGFS TKSQPCTYDK SKLCKPALAT ALFSTVSFLL GAITSVLSGF LGMKIATYAN ARTTLEARKG VGKAFITAFR SGAVMGFLLA
201: ANGLLVLYIT INLFKLYYGD DWEGLFEAIT GYGLGGSSMA LFGRVGGGIY TKAADVGADL VGKVERNIPE DDPRNPAVIA DNVGDNVGDI AGMGSDLFGS
301: YAESSCAALV VASISSFGIN HEFTAMLYPL LISSMGIIVC LITTLFATDF FEIKAVKEIE PALKKQLIIS TVLMTVGIAI ISWIALPTSF TIFNFGAQKE
401: VKSWQLFLCV GVGLWAGLII GFVTEYYTSN AYSPVQDVAD SCRTGAATNV IFGLALGYKS VIIPIFAIAI SIFVSFTFAA MYGIAVAALG MLSTIATGLA
501: IDAYGPISDN AGGIAEMAGM SHRIRERTDA LDAAGNTTAA IGKGFAIGSA ALVSLALFGA FVSRAGISTV DVLTPKVFIG LIVGAMLPYW FSAMTMKSVG
601: SAALKMVEEV RRQFNTIPGL MEGHAKPDYA TCVKISTDAS IKEMIPPGAL VMLTPLIVGI FFGVETLSGV LAGALVSGVQ IAISASNTGG AWDNAKKYIE
701: AGASEHARTL GPKGSEPHKA AVIGDTIGDP LKDTSGPSLN ILIKLMAVES LVFAPFFATH GGLLFKIF
Best Arabidopsis Sequence Match ( AT1G15690.1 )
(BLAST)
001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF
Arabidopsis Description
AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.