CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
vacuole 6
extracellular 4
endoplasmic reticulum 5
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03609	Soybean	plasma membrane	97.91	99.34
Os02t0184200-01	Rice	plasma membrane	39.22	95.54
PGSC0003DMT400078835	Potato	extracellular	92.29	92.29
Solyc07g007600.2.1	Tomato	nucleus, plastid	91.9	91.9
PGSC0003DMT400020475	Potato	endoplasmic reticulum, plasma membrane, vacuole	91.9	91.42
Solyc12g009840.1.1	Tomato	nucleus, unclear	91.76	91.29
KRH44486	Soybean	endoplasmic reticulum	91.5	91.15
KRH47417	Soybean	nucleus	91.37	91.02
Zm00001d007132_P001	Maize	extracellular, golgi, vacuole	13.59	90.43
KRH61103	Soybean	endoplasmic reticulum, plasma membrane	13.33	89.47
EES06395	Sorghum	plasma membrane	89.02	88.9
Zm00001d015569_P001	Maize	plasma membrane	88.5	88.38
Zm00001d046591_P001	Maize	plasma membrane	88.63	87.94
Os06t0644200-01	Rice	plasma membrane	88.89	86.96
TraesCS7B01G433800.1	Wheat	plastid, unclear	87.19	85.95
TraesCS7D01G507600.1	Wheat	golgi	86.8	85.68
TraesCS7A01G517700.2	Wheat	golgi	86.8	85.68
OQU76770	Sorghum	plasma membrane	88.76	84.66
HORVU7Hr1G115540.9	Barley	golgi, plasma membrane, plastid	87.71	82.53
KRG90549	Soybean	endoplasmic reticulum, plasma membrane, vacuole	81.05	81.26
Zm00001d053727_P003	Maize	plasma membrane	88.37	78.7
Zm00001d023416_P001	Maize	golgi, peroxisome, plasma membrane	32.55	77.57
KRH33828	Soybean	endoplasmic reticulum	71.76	76.14
Zm00001d021760_P001	Maize	endoplasmic reticulum, extracellular, vacuole	30.85	75.88
Zm00001d041315_P001	Maize	plastid	70.98	75.73
Zm00001d012070_P001	Maize	plastid	31.9	66.3
KRH71586	Soybean	extracellular	11.63	63.57
Zm00001d003860_P002	Maize	mitochondrion	30.98	58.81
Zm00001d032330_P001	Maize	plastid	32.94	52.72
KRH46977	Soybean	endoplasmic reticulum	37.25	35.58
KRH44688	Soybean	plasma membrane	36.73	35.08

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:100775864	MapMan:24.1.4.1	UniProt:A0A0R4J4T0	EMBL:ACUP02008248	EnsemblPlantsGene:GLYMA_13G162800
GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0009678	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0055085	GO:GO:1902600	EnsemblPlants:KRH20199	ProteinID:KRH20199	ProteinID:KRH20199.1	HAMAP:MF_01129
PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998	PANTHER:PTHR31998:SF10	MetaCyc:PWY-7805
MetaCyc:PWY-7807	TIGRFAMs:TIGR01104	TMHMM:TMhelix	UniParc:UPI0001B6375A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:27817824..27822630

Molecular Weight (calculated)

80109.0 Da

IEP (calculated)

5.032

GRAVY (calculated)

0.631

Length

765 amino acids

Sequence
(BLAST)

001: MGAVILPDLG TEILIPVCAI IGIGFALFQW VLVSKVKLSA ARDASPNAAG KNGYNDYLIE EEEGLNDHNV VLKCAEIQNA ISEGATSFLF TEYKYVGIFM
101: VAFAILIFLF LGSVEGFSTS YQPCTYDQTK MCKPALATAV FSTISFLLGG VTSLISGFLG MKIATYANAR TTLEARKGVG KAFITAFRSG AVMGFLLAAN
201: GLLVLYIAIN LFKIYYGDDW GGLFEAITGY GLGGSSMALF GRVGGGIYTK AADVGADLVG KVERNIPEDD PRNPAVIADN VGDNVGDIAG MGSDLFGSYA
301: ESSCAALVVA SISSFGVNHE LTAMLYPLII SSVGILVCLL TTLFATDFFE IKAVKEIEPA LKKQLIISTA LMTIGIAIVS WIALPTSFTI FNFGVQKDVK
401: NWQLFLCVAV GLWAGLIIGF VTEYYTSNAY SPVQDVADSC RTGAATNVIF GLALGYKSVI IPIFAIAISI FVSFTFAAMY GIAVAALGML STIATGLAID
501: AYGPISDNAG GIAEMAGMSH RIRERTDALD AAGNTTAAIG KGFAIGSAAL VSLALFGAFV SRAAITTVDV LTPKVFIGLI VGAMLPYWFS AMTMKSVGSA
601: ALKMVEEVRR QFNTIPGLME GTAKPDYATC VKISTDASIK EMIPPGALVM LTPLVVGILF GVETLSGVLA GSLVSGVQIA ISASNTGGAW DNAKKYIEAG
701: ASEHARSLGP KGSDCHKAAV IGDTIGDPLK DTSGPSLNIL IKLMAVESLV FAPFFATHGG LLFKI

Best Arabidopsis Sequence Match ( AT1G15690.1 )
(BLAST)

001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF

Arabidopsis Description

AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.