Factsheet for Solyc12g009840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

cytosol 1
vacuole 6
extracellular 3
endoplasmic reticulum 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020475	Potato	endoplasmic reticulum, plasma membrane, vacuole	98.7	98.7
Os02t0184200-01	Rice	plasma membrane	39.01	95.54
Solyc07g007600.2.1	Tomato	nucleus, plastid	93.37	93.86
KRH20199	Soybean	nucleus	91.29	91.76
KRH03609	Soybean	plasma membrane	89.34	91.11
Zm00001d007132_P001	Maize	extracellular, golgi, vacuole	13.52	90.43
Solyc03g117480.2.1	Tomato	nucleus, unclear	89.6	89.83
Solyc06g068240.2.1	Tomato	plastid	88.69	88.92
EES06395	Sorghum	plasma membrane	87.26	87.6
Zm00001d015569_P001	Maize	plasma membrane	86.87	87.21
Zm00001d046591_P001	Maize	plasma membrane	86.61	86.38
Os06t0644200-01	Rice	plasma membrane	86.74	85.29
TraesCS7A01G517700.2	Wheat	golgi	85.83	85.16
TraesCS7B01G433800.1	Wheat	plastid, unclear	85.83	85.05
TraesCS7D01G507600.1	Wheat	golgi	85.7	85.03
OQU76770	Sorghum	plasma membrane	86.61	83.04
Solyc01g100390.2.1	Tomato	nucleus, plastid, unclear	81.01	81.87
HORVU7Hr1G115540.9	Barley	golgi, plasma membrane, plastid	86.22	81.55
Zm00001d023416_P001	Maize	golgi, peroxisome, plasma membrane	32.51	77.88
Zm00001d053727_P003	Maize	plasma membrane	86.48	77.42
Zm00001d041315_P001	Maize	plastid	70.48	75.59
Zm00001d021760_P001	Maize	endoplasmic reticulum, extracellular, vacuole	30.3	74.92
Zm00001d012070_P001	Maize	plastid	31.08	64.95
Zm00001d003860_P002	Maize	mitochondrion	30.82	58.81
Zm00001d032330_P001	Maize	plastid	32.51	52.3
Solyc04g071880.2.1	Tomato	nucleus, plastid	36.54	35.12

Protein Annotations

KEGG:00190+3.6.1.1	MapMan:24.1.4.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009678	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0055085	GO:GO:1902600	UniProt:K4DC72	HAMAP:MF_01129
PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998	PANTHER:PTHR31998:SF10	EnsemblPlantsGene:Solyc12g009840.1
EnsemblPlants:Solyc12g009840.1.1	TIGRFAMs:TIGR01104	TMHMM:TMhelix	UniParc:UPI0002769B37	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:3032882..3037112

Molecular Weight (calculated)

80305.9 Da

IEP (calculated)

4.788

GRAVY (calculated)

0.601

Length

769 amino acids

Sequence
(BLAST)

001: MGTTILPDLG TEILIPVCAV IGIGFALVQW VIVSKVTVST DGKSSSPGAG ADGKNGYAES LIEEEEGIND HSVVRKCAEI QNAIAEGATS FLFTEYQYVG
101: VFMVAFALLI FLFLGSVEGF STKSQECTYD SSKMCKPALA TAVFSTISFL LGAITSVISG FLGMKIATYA NARTTLEARK GVGKAFIVAF RSGAVMGFLL
201: AANGLLVLYI AINVFKLYYG DDWEGLFEAI TGYGLGGSSM ALFGRVGGGI YTKAADVGAD LVGKVERNIP EDDPRNPAVI ADNVGDNVGD IAGMGSDLFG
301: SYAESSCAAL VVASISSFGV NHEFTAMLYP LLISSVGILV CLLTTLFATD FFEVKAVKEI EPALKKQLVI STVLMTIGIA LVSWTALPST FTIFNFGIQK
401: EVQSWQLFLC VGVGLWAGLI IGFVTEYYTS NAYSPVQDVA DSCRTGAATN IIFGLALGYK SVIIPIFAIA ISIFVSFSFA AMYGIAVAAL GMLSTIATGL
501: AIDAYGPISD NAGGIAEMAG MSHRIRERTD ALDAAGNTTA AIGKGFAIGS AALVSLALFG AFVSRAGIST VDVLTPKVFI GLLVGAMLPY WFSAMTMKSV
601: GSAALKMVEE VRRQFNTIPG LMEGTAKPDY ANCVKISTDA SIKEMIPPGA LVMLTPLIVG ILFGVETLSG VLAGSLVSGV QIAISASNTG GAWDNAKKYI
701: EAGTSEHAKT LGPKGSDPHK AAVIGDTVGD PLKDTSGPSL NILIKLMAVE SLVFAPFFAT HGGLLFKMF

Best Arabidopsis Sequence Match ( AT1G15690.1 )
(BLAST)

001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF

Arabidopsis Description

AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.