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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 1
  • vacuole 6
  • extracellular 4
  • endoplasmic reticulum 5
  • plasma membrane 6
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, secretory
BaCelLo:cytosol
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plastid: 20363867
nucleus: 25464976
plastid: 26371478
unclear: 26455813
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400073438 Potato endoplasmic reticulum, plasma membrane, vacuole 36.64 97.57
VIT_09s0002g07920.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 46.68 95.47
VIT_09s0002g07940.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 48.89 94.94
Solyc03g117480.2.1 Tomato nucleus, unclear 94.78 94.78
KRH47417 Soybean nucleus 93.35 93.23
KRH44486 Soybean endoplasmic reticulum 93.22 93.1
VIT_09s0002g07880.t01 Wine grape extracellular 91.79 91.79
VIT_11s0118g00350.t01 Wine grape plasma membrane 89.57 89.92
Solyc07g007600.2.1 Tomato nucleus, plastid 89.31 89.54
AT1G15690.1 Thale cress plasma membrane 89.05 88.7
Solyc12g009840.1.1 Tomato nucleus, unclear 88.92 88.69
CDX87313 Canola endoplasmic reticulum, plasma membrane, vacuole 88.79 88.56
CDY39975 Canola plasma membrane 88.66 88.43
CDX96835 Canola plasma membrane 88.53 88.3
CDX83972 Canola plasma membrane 88.53 88.3
Bra035179.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 88.53 88.3
CDY36581 Canola plasma membrane 88.66 88.2
CDY33390 Canola plasma membrane 88.53 88.07
Bra016653.1-P Field mustard plasma membrane 88.14 87.91
KRH61103 Soybean endoplasmic reticulum, plasma membrane 13.04 87.72
Bra026115.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 88.14 87.68
VIT_09s0002g08010.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 28.81 85.33
CDY53310 Canola plasma membrane 89.05 85.16
Solyc01g100390.2.1 Tomato nucleus, plastid, unclear 82.14 82.79
CDX81728 Canola plasma membrane 89.31 58.35
Zm00001d041187_P002 Maize cytosol, endoplasmic reticulum, golgi 10.82 51.88
Solyc04g071880.2.1 Tomato nucleus, plastid 36.25 34.75
Protein Annotations
KEGG:00190+3.6.1.1MapMan:24.1.4.1GO:GO:0003674GO:GO:0003824GO:GO:0004427GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0009678GO:GO:0015992GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0055085GO:GO:1902600UniProt:K4C7Z9HAMAP:MF_01129
PFAM:PF03030PIRSF:PIRSF001265InterPro:PPase-energised_H-pumpPANTHER:PTHR31998PANTHER:PTHR31998:SF10EnsemblPlantsGene:Solyc06g068240.2
EnsemblPlants:Solyc06g068240.2.1TIGRFAMs:TIGR01104TMHMM:TMhelixUniParc:UPI000276638ESEG:seg:
Description
No Description!
Coordinates
chr6:+:42297948..42302483
Molecular Weight (calculated)
80661.4 Da
IEP (calculated)
4.788
GRAVY (calculated)
0.600
Length
767 amino acids
Sequence
(BLAST)
001: MGSALLSEFG TEIVIPICAV IGIVFSLVQW YLVSLVKLSP EQGGCSPRNN KNNGFNESLV EEEEGINDQN VVVKCAEIQN AISEGATSFL FTEYQYVGIF
101: MVAFAVLIFV FLGSVEGFST KSQPCTYNKE KMCKPALATA IFSTISFLLG AVTSVVSGFL GMKIATYANA RTTLEARKGV GKAFITAFRS GAVMGFLLAA
201: NGLLVLYITI NLFKLYYGDD WEGLFEAITG YGLGGSSMAL FGRVGGGIYT KAADVGADLV GKVERNIPED DPRNPAVIAD NVGDNVGDIA GMGSDLFGSY
301: AESSCAALVV ASISSFGIDH DFTAMCYPLL ISSMGILVCL ITTLFATDFF EIKAVKEIEP ALKHQLIIST ALMTVGIAIV TWTCLPSSFT IFNFGTQKVV
401: KNWQLFLCVA IGLWAGLIIG FVTEYYTSNA YSPVQDVADS CRTGAATNVI FGLALGYKSV IIPIFAIAVA IFVSFTFAAM YGIAVAALGM LSTIATGLAI
501: DAYGPISDNA GGIAEMAGMS HRIRERTDAL DAAGNTTAAI GKGFAIGSAA LVSLALFGAF VSRASISTVD VLTPEVFIGL IVGAMLPYWF SAMTMKSVGS
601: AALKMVEEVR RQFNTIPGLM EGLAKPDYAT CVKISTDASI KEMIPPGALV MLTPLIVGIF FGVETLSGVL AGALVSGVQI AISASNTGGA WDNAKKYIEA
701: GASEHARTLG PKGSEPHKAA VIGDTIGDPL KDTSGPSLNI LIKLMAVESL VFAPFFATHG GILFKIF
Best Arabidopsis Sequence Match ( AT1G15690.1 )
(BLAST)
001: MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV
101: GVFMIFFAAV IFVFLGSVEG FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR KGVGKAFIVA FRSGAVMGFL
201: LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF
301: GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ
401: KVVKNWQLFL CVCVGLWAGL IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF AAMYGVAVAA LGMLSTIATG
501: LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS
601: VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY
701: IEAGVSEHAK SLGPKGSEPH KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF
Arabidopsis Description
AVP1VHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA14]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.