CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
nucleus 1
golgi 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44688	Soybean	plasma membrane	97.75	97.75
CDY70253	Canola	golgi, plasma membrane	29.21	93.6
CDY70021	Canola	golgi, plasma membrane	28.34	93.03
VIT_09s0054g00700.t01	Wine grape	plasma membrane	90.51	90.62
AT1G78920.2	Thale cress	plasma membrane	87.39	87.28
CDX88491	Canola	plasma membrane	87.39	87.28
CDX87422	Canola	plasma membrane	87.27	87.16
Bra035076.1-P	Field mustard	plasma membrane	87.27	87.16
Bra008386.1-P	Field mustard	plasma membrane	87.14	86.92
AT1G16780.1	Thale cress	golgi, mitochondrion, plasma membrane	86.89	86.78
TraesCS6B01G376400.1	Wheat	golgi	86.52	86.73
TraesCSU01G080600.1	Wheat	plasma membrane	86.39	86.61
Os02t0537900-01	Rice	plasma membrane	86.39	86.61
HORVU6Hr1G083160.1	Barley	plasma membrane	86.27	86.48
TraesCS6D01G326300.1	Wheat	plasma membrane	86.14	86.36
PGSC0003DMT400064558	Potato	plasma membrane	82.77	86.33
Solyc04g071880.2.1	Tomato	nucleus, plastid	86.02	86.12
EES17335	Sorghum	plasma membrane	85.52	85.73
Zm00001d030996_P011	Maize	plasma membrane	85.14	85.36
Zm00001d041420_P003	Maize	plasma membrane	84.64	84.01
CDY69568	Canola	plasma membrane	35.96	83.24
GSMUA_Achr5P13160_001	Banana	plasma membrane	85.77	82.97
CDY69601	Canola	plasma membrane	35.83	82.95
GSMUA_Achr1P01170_001	Banana	cytosol, plasma membrane, vacuole	26.84	71.67
KRH61103	Soybean	endoplasmic reticulum, plasma membrane	6.49	45.61
KRH44486	Soybean	endoplasmic reticulum	35.83	37.37
KRH03609	Soybean	plasma membrane	35.08	37.27
KRH20199	Soybean	nucleus	35.58	37.25
KRH47417	Soybean	nucleus	35.71	37.24
KRG90549	Soybean	endoplasmic reticulum, plasma membrane, vacuole	34.71	36.44
KRH71586	Soybean	extracellular	6.12	35.0
KRH33828	Soybean	endoplasmic reticulum	31.21	34.67

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:100787805	MapMan:24.1.4.2	EMBL:ACUP02004132	EnsemblPlantsGene:GLYMA_07G001500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004427	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0009678	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0055085
GO:GO:1902600	UniProt:I1KG22	EnsemblPlants:KRH46977	ProteinID:KRH46977	ProteinID:KRH46977.1	ProteinID:KRH46978.1
HAMAP:MF_01129	PFAM:PF03030	PIRSF:PIRSF001265	InterPro:PPase-energised_H-pump	PANTHER:PTHR31998	PANTHER:PTHR31998:SF11
MetaCyc:PWY-7805	MetaCyc:PWY-7807	TIGRFAMs:TIGR01104	TMHMM:TMhelix	UniParc:UPI00023384F0	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:148721..156670

Molecular Weight (calculated)

84900.5 Da

IEP (calculated)

5.725

GRAVY (calculated)

0.638

Length

801 amino acids

Sequence
(BLAST)

001: MMDHDLETAA LGAYQDKPRT FPNMRTKPYT PLIFRILLGI NVRVLFILLL LGLGAIFYVG ASTSPIIVFV ISVCILSFLV AIYLTKWVLA KDEGPPEMVQ
101: ISDAIRDGAE GFFRTQYGSI SKMAMLLALV ILCIYLFRST TPQQESSGLG RTTSAYITVA SFLLGALCSG VAGYVGMWVS VRANVRVSSA ARRSAREALQ
201: VATRAGGLSA IIVVGMAVIG IAVLYATFYV WLGVDLPGSM KVTDLPLLLV GYGFGASFVA LFAQLGGGIY TKAADVGADL VGKVEQGIPE DDPRNPAVIA
301: DLVGDNVGDC AARGADLFES IAAEIISAMI LGGTMAQRCK IADPSGFILF PLVVHSFDLI VSSAGIFSIR GTRETGIIVP MEDPMTILQK GYSFTIVLAV
401: LAFGLSTRWL LYTEQAPSAW FNFALCGLIG IITAYIFVWI AKYYTDYKHE PVRILALSSS TGHGTNIIAG VSLGLESTAL PVLVISVSII SAFWLGHTCG
501: LVDETGNPTG GLFGTAVATM GMLSTAAYIL TMDMFGPIAD NAGGIVEMSQ QPESVREITD VLDAVGNTTK ATTKGFAIGS AALASFLLFS AYMDEVSAFA
601: HEPFKQVDIA IPEVFVGGLL GSMLIFVFSA WACAAVGRTA QEVVNEVRRQ FIERPGIMDY KEKPDYGRCV AIVASASLRE MIKPGALAII SPIVVGILFR
701: ILGYYTGQPL LGAKVVAALL MFATVSGILM ALFLNTAGGA WDNAKKYIET GALGGKGSEA HKAAITGDTV GDPFKDTAGP SIHVLIKMLA TITLVMAPVF
801: L

Best Arabidopsis Sequence Match ( AT1G16780.1 )
(BLAST)

001: MMMDEDVEQA TLVSYSDKPR TFPDMRSKTY SPLIIRILRN LNVRALSVLL LLSFGGIFYM GARTSPIIVF VFVVCIISFM LSVYLTKWVL AKDEGPPEMV
101: QISDAIRDGA EGFLRTQYGT ISKMAFLLAF VILCIYLFRN LTPQQEASGL GRTMSAYITV AAFLLGALCS GIAGYVGMWV SVRANVRVSS AARRSAREAL
201: QIAVRAGGFS ALVVVGMAVI GIAILYSTFY VWLDVDSPGS MKVTDLPLLL VGYGFGASFV ALFAQLGGGI YTKGADVGAD LVGKVEHGIP EDDPRNPAVI
301: ADLVGDNVGD CAARGADLFE SIAAEIISAM ILGGTMAQKC KIEDPSGFIL FPLVVHSFDL VISSIGILSI KGTRNASVKS PVEDPMVVLQ KGYSLTIILA
401: VLTFGASTRW LLYTEQAPSA WLNFFMCGLV GIITAYVFVW ISRYYTDYKY EPVRTLALAS STGHGTNIIA GVSLGLESTA LPVLVISVAI ISAFWLGNTS
501: GLIDEKGNPT GGLFGTAVAT MGMLSTAAYV LTMDMFGPIA DNAGGIVEMS QQPESVREIT DVLDAVGNTT KATTKGFAIG SAALASFLLF SAYMDEVSAF
601: ANVSFKEVDI AIPEVFIGGL LGAMLIFLFS AWACAAVGRT AQEVVNEVRR QFIERPGIMD YKEKPDYGRC VAIVASSALR EMIKPGALAI ISPIAVGFVF
701: RILGYYTGQP LLGAKVVAAM LMFATVCGIL MALFLNTAGG AWDNAKKYIE TGALGGKGSD SHKAAVTGDT VGDPFKDTAG PSIHVLIKML ATITLVMAPI
801: FL

Arabidopsis Description

AVPL2Pyrophosphate-energized membrane proton pump 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWR2]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.