Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G418800.1 | Wheat | cytosol, extracellular, mitochondrion | 96.26 | 97.3 |
| TraesCS1D01G398700.1 | Wheat | cytosol, extracellular, mitochondrion | 95.19 | 96.22 |
| EES07039 | Sorghum | cytosol, extracellular, mitochondrion | 79.68 | 82.32 |
| Os02t0579800-01 | Rice | cytosol, extracellular, plastid | 68.45 | 79.01 |
| Zm00001d050899_P001 | Maize | cytosol, extracellular, mitochondrion | 75.4 | 77.9 |
| TraesCS4A01G365600.1 | Wheat | cytosol, extracellular, plastid | 53.48 | 64.52 |
| TraesCS4A01G365700.1 | Wheat | cytosol, extracellular, mitochondrion | 51.87 | 61.78 |
| TraesCS4A01G365500.1 | Wheat | extracellular | 51.34 | 60.76 |
| TraesCS7A01G207500.1 | Wheat | extracellular | 34.76 | 55.56 |
| TraesCS2A01G016100.1 | Wheat | extracellular | 43.32 | 55.48 |
| TraesCS7A01G515200.1 | Wheat | cytosol, extracellular, nucleus | 48.66 | 55.15 |
| GSMUA_Achr9P27300_001 | Banana | cytosol, plastid, vacuole | 51.34 | 54.86 |
| TraesCS2A01G016000.1 | Wheat | endoplasmic reticulum, extracellular | 39.57 | 52.86 |
| TraesCS6A01G321000.1 | Wheat | plastid | 49.73 | 49.73 |
| TraesCS2A01G052000.1 | Wheat | cytosol, extracellular, plastid | 40.11 | 49.34 |
| TraesCS7A01G207600.1 | Wheat | cytosol | 16.04 | 44.12 |
| TraesCS5A01G428100.1 | Wheat | plastid | 22.46 | 41.18 |
| TraesCS7A01G161300.1 | Wheat | cytosol, mitochondrion, plastid | 32.09 | 31.75 |
| TraesCS3A01G184200.2 | Wheat | extracellular | 28.88 | 29.35 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G390500.1 | EnsemblPlantsGene:TraesCS1A01G390500 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF98 | PFAM:PF04749 |
| SEG:seg | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1A:+:557989219..557989881
Molecular Weight (calculated)
19889.0 Da
IEP (calculated)
6.447
GRAVY (calculated)
-0.003
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPKPEDGPA TGFPMSGGTG VGVGGGGGPG AYYQAAPATA AFAMQAQAPL AAWSTGLCDC FDDCGNCCIT CLCPCITFGQ VAEIIDRGST SCGASGALYA
101: LIMLLTGCQC VYSCFYRSKM RAHYGLQESP CADCCIHWCC EPCALCQEYR ELKKRGFDMN LGWHANMERQ GRTPATMPPL MHPGMTR
101: LIMLLTGCQC VYSCFYRSKM RAHYGLQESP CADCCIHWCC EPCALCQEYR ELKKRGFDMN LGWHANMERQ GRTPATMPPL MHPGMTR
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
Arabidopsis Description
PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.