Factsheet for TraesCS3A01G055600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 28628250

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G055500.1	Wheat	golgi	99.62	99.62
TraesCS2A01G337300.1	Wheat	cytosol	91.98	91.64
TraesCS3B01G068000.1	Wheat	cytosol	96.18	89.36
TraesCS4A01G268700.1	Wheat	cytosol	82.06	82.38
TraesCS4A01G151000.2	Wheat	cytosol	81.3	78.89
TraesCS7A01G295500.1	Wheat	golgi	71.76	72.59
TraesCS4A01G167100.1	Wheat	cytosol	45.04	48.36

Protein Annotations

EnsemblPlants:TraesCS3A01G055600.1	EnsemblPlantsGene:TraesCS3A01G055600	Gene3D:1.20.190.20	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0019904	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	InterPro:IPR036815
ncoils:Coil	PANTHER:PTHR18860	PANTHER:PTHR18860:SF36	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305
ScanProsite:PS00796	ScanProsite:PS00797	SMART:SM00101	SUPFAM:SSF48445	MapMan:35.1	:

Description

No Description!

Coordinates

chr3A:-:32150059..32151837

Molecular Weight (calculated)

29693.0 Da

IEP (calculated)

4.382

GRAVY (calculated)

-0.496

Length

262 amino acids

Sequence
(BLAST)

001: MAQPAELSRE ENVYMAKLAE QAERYEEMVE FMEKVAKTVD SEELTVEERN LLSVAYKNVI GARRASWRII SSIEQKEESR GNEDRVTLIK DYRGKIEVEL
101: TKICDGILKL LDSHLVPSST APESKVFYLK MKGDYYRYLA EFKSGTERKD AAENTMVAYK AAQEIALAEL PPTHPIRLGL ALNFSVFYYE ILNSPDRACD
201: LAKQAFDEAI SELDSLSEES YKDSTLIMQL LRDNLTLWTS DISEDAAEEM KDAPKGESGD GQ

Best Arabidopsis Sequence Match ( AT4G09000.1 )
(BLAST)

001: MATPGASSAR DEFVYMAKLA EQAERYEEMV EFMEKVAKAV DKDELTVEER NLLSVAYKNV IGARRASWRI ISSIEQKEES RGNDDHVSLI RDYRSKIETE
101: LSDICDGILK LLDTILVPAA ASGDSKVFYL KMKGDYHRYL AEFKSGQERK DAAEHTLTAY KAAQDIANSE LAPTHPIRLG LALNFSVFYY EILNSPDRAC
201: NLAKQAFDEA IAELDTLGEE SYKDSTLIMQ LLRDNLTLWT SDMQDDVADD IKEAAPAAAK PADEQQS

Arabidopsis Description

GRF1General regulatory factor 1 [Source:UniProtKB/TrEMBL;Acc:F4JJ94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.