Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G199200.1 | Wheat | nucleus, plastid | 27.93 | 25.4 |
| TraesCS7D01G296000.2 | Wheat | nucleus | 20.7 | 21.5 |
| TraesCS5D01G401100.1 | Wheat | nucleus | 20.45 | 21.19 |
| Os12t0622500-01 | Rice | nucleus | 20.95 | 17.25 |
Protein Annotations
| Gene3D:3.40.1360.10 | MapMan:35.1 | GO:GO:0000737 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005694 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | PRINTS:PR01550 |
| PANTHER:PTHR10848 | PANTHER:PTHR10848:SF3 | SUPFAM:SSF56726 | InterPro:Spo11/TopoVI_A | InterPro:Spo11/TopoVI_A_sf | InterPro:TOPRIM_Topo6A/Spo11 |
| EnsemblPlantsGene:TraesCS3D01G170600 | EnsemblPlants:TraesCS3D01G170600.1 | TIGR:cd00223 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:+:149609055..149610260
Molecular Weight (calculated)
44295.2 Da
IEP (calculated)
5.775
GRAVY (calculated)
-0.146
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEETAVG TAAEGSDLRS FFSTRGVAAD LAALDDQTLK ALDEKYIIAR DLDAATVLSK IHHLVGHSEA SIVPYEGLSY QLPCRDPGQH EYDPTLRQLC
101: LRRGKVETCT VGDPRTSRKA EIITATLSLV KKTVLSGHRS FSDGLRYGDE VFKQDKKTVD DALLDICCLL ECPRASLKML ELGPGTVVGP LIFTMEDGAE
201: NHCRSFGPSG ARVHEGISNI TVEQGATVNF ILLVQRDDVF WDFARSQLRH ELNCVVMTGG DGEPNVMTRA FLRKLKDCLS VPVYALTDSD PEGISIFCTY
301: KFGSAEMPFD NVGLTIPDIK LIAYIGDDAL HLSHLQPLAK RDRSILKGLC AQKHVIGDEQ LRENIHFMMN RGLKCKIEAL YYLQYPPTDY IRKAVGNLED
401: I
101: LRRGKVETCT VGDPRTSRKA EIITATLSLV KKTVLSGHRS FSDGLRYGDE VFKQDKKTVD DALLDICCLL ECPRASLKML ELGPGTVVGP LIFTMEDGAE
201: NHCRSFGPSG ARVHEGISNI TVEQGATVNF ILLVQRDDVF WDFARSQLRH ELNCVVMTGG DGEPNVMTRA FLRKLKDCLS VPVYALTDSD PEGISIFCTY
301: KFGSAEMPFD NVGLTIPDIK LIAYIGDDAL HLSHLQPLAK RDRSILKGLC AQKHVIGDEQ LRENIHFMMN RGLKCKIEAL YYLQYPPTDY IRKAVGNLED
401: I
001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL
Arabidopsis Description
TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.