Factsheet for TraesCS5D01G401100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G275100.2
TraesCS2B01G292500.2
TraesCS2B01G292600.1
TraesCS2D01G274100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	TraesCS2A01G275100.2	AT4G14180.1	17762870
AT3G13170.1	TraesCS2B01G292500.2	AT4G14180.1	17762870
AT3G13170.1	TraesCS2B01G292600.1	AT4G14180.1	17762870
AT3G13170.1	TraesCS2D01G274100.1	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G396300.1	Wheat	nucleus	96.12	96.37
TraesCS5A01G391400.2	Wheat	nucleus	95.87	92.98
Os03t0752200-01	Rice	nucleus	80.88	82.15
EER93438	Sorghum	nucleus	78.04	78.85
VIT_19s0015g00280.t01	Wine grape	cytosol	58.14	62.33
KRH73898	Soybean	cytosol	55.04	58.04
AT3G13170.1	Thale cress	cytosol	52.97	56.63
CDY24207	Canola	cytosol	52.71	56.35
CDY43366	Canola	cytosol	52.71	56.35
Bra039374.1-P	Field mustard	cytosol	52.2	55.8
GSMUA_Achr10P...	Banana	plasma membrane	25.32	52.69
Solyc07g065440.2.1	Tomato	nucleus	19.64	51.7
PGSC0003DMT400057070	Potato	mitochondrion	24.29	51.09
Solyc07g065430.2.1	Tomato	cytosol	32.04	32.38
TraesCS4D01G199200.1	Wheat	nucleus, plastid	29.72	26.08
TraesCS7D01G296000.2	Wheat	nucleus	23.51	23.58
TraesCS3D01G170600.1	Wheat	cytosol	21.19	20.45

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	GO:GO:0000003	GO:GO:0000166	GO:GO:0000724
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0007049	GO:GO:0007129	GO:GO:0007131
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0042138
GO:GO:0051026	InterPro:IPR036388	InterPro:Meiotic_Spo11	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01551
PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf
InterPro:TOPRIM_Topo6A/Spo11	EnsemblPlantsGene:TraesCS5D01G401100	EnsemblPlants:TraesCS5D01G401100.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd00223	SEG:seg

Description

No Description!

Coordinates

chr5D:+:466225939..466229908

Molecular Weight (calculated)

43988.6 Da

IEP (calculated)

8.192

GRAVY (calculated)

-0.002

Length

387 amino acids

Sequence
(BLAST)

001: MAGSGKRRRA TVLDDDERRG RRRLEEAALL LHKIKGLVGW VVAEISAGRS PSLALHRYQN YCASADAAAA AASPSTCACS YDAPVGTDVL SLLRKEFHAS
101: RLNVLLRVLL VVQQLLQENK HCSKRDIYYM YPSMFVEQAI VDRAINDICI LFKCSRHNLN VVPVAKGLVM GWIRFVEGEK KVYCITNVNA AFPIPVSIEA
201: IKDVVSVAHY ILVVEKEAVF QRLANDKFCE KNRCIVITGR GYPDIPTRRF LRYLVEQLHL PAYCLVDSDP YGFDILATYK FGSMQLAYDA NVLRVPEIRW
301: LGVFTSDFEE YCLPDCCQLQ LSSEDRRKLE GILTRCYLHK EAPEWRLKLE AMLEMGVKFE IEALSASSIS FLSQEYIPQQ IRLGRYI

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.