CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH31552

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	KRH31552	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00280.t01	Wine grape	cytosol	73.84	75.07
CDY24207	Canola	cytosol	67.57	68.51
CDY43366	Canola	cytosol	67.3	68.23
Bra039374.1-P	Field mustard	cytosol	67.03	67.96
AT3G13170.1	Thale cress	cytosol	65.94	66.85
Solyc07g065440.2.1	Tomato	nucleus	25.61	63.95
GSMUA_Achr10P...	Banana	nucleus	18.8	62.73
PGSC0003DMT400057070	Potato	mitochondrion	30.25	60.33
Os03t0752200-01	Rice	nucleus	58.31	56.17
EER93438	Sorghum	nucleus	58.04	55.61
TraesCS5D01G401100.1	Wheat	nucleus	58.04	55.04
TraesCS5B01G396300.1	Wheat	nucleus	57.77	54.92
TraesCS5A01G391400.2	Wheat	nucleus	57.49	52.88
GSMUA_Achr10P...	Banana	plasma membrane	25.07	49.46
Solyc07g065430.2.1	Tomato	cytosol	40.05	38.38
KRH19789	Soybean	nucleus	31.06	27.34
KRH32381	Soybean	nucleus	31.06	27.21
KRH27888	Soybean	nucleus, plasma membrane, plastid	24.8	23.82

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100813920	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	EMBL:ACUP02001289	EnsemblPlantsGene:GLYMA_02G299600
GO:GO:0000003	GO:GO:0000166	GO:GO:0000228	GO:GO:0000706	GO:GO:0000724	GO:GO:0000737
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918	GO:GO:0004518
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0007049	GO:GO:0007129
GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016889	GO:GO:0042138	GO:GO:0051026	UniProt:I1JJJ1	InterPro:IPR036388
EnsemblPlants:KRH73898	ProteinID:KRH73898	ProteinID:KRH73898.1	ProteinID:KRH73899.1	InterPro:Meiotic_Spo11	PFAM:PF04406
PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A
InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI0002337019	InterPro:WH-like_DNA-bd_sf	:

Description

hypothetical protein

Coordinates

chr2:-:47646816..47651043

Molecular Weight (calculated)

42205.5 Da

IEP (calculated)

7.781

GRAVY (calculated)

-0.042

Length

367 amino acids

Sequence
(BLAST)

001: MEGKRTRFQS ESQPQSVILL TKIKEFTRAL LADLTNGRSP LILIDRFRSY CTLSNSNCFC ASDLPCGKEL LTLRRKSHAH RLAVMLRVML IVQKLLQENK
101: HSSKRDIYYT YPSVFLDQSV VDQAINDICI LMQCSRHNLN VVSAGNGLIM GWIRFSEGER IFDCISSPNT AHPVPVHVEE VQDIISLAQY ILVVEKESVF
201: QRLANDQFCN ANHCIVITGR GYPDIPTRRF LRLLVENLCL PAYCLVDCDP YGFDILTTYR FGSMQMAYDT KHLRVPEIQW LGAFPSDSER YFVPNQCLLP
301: LTAEDKRKVE AMLLRCYLER EVPQWRLELQ LILQRGVKFE IEALSVHALS FLSESYIPSK IEGKLIM

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.