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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • golgi 1
  • nucleus 2
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:golgi
MultiLoc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os04t0347700-01
Os04t0347800-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13170.1 Os04t0347700-01 AT4G14180.1 17762870
AT3G13170.1 Os04t0347800-01 AT4G14180.1 17762870
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER93438 Sorghum nucleus 84.25 83.81
TraesCS5D01G401100.1 Wheat nucleus 82.15 80.88
TraesCS5B01G396300.1 Wheat nucleus 80.31 79.27
TraesCS5A01G391400.2 Wheat nucleus 80.84 77.19
VIT_19s0015g00280.t01 Wine grape cytosol 59.32 62.6
KRH73898 Soybean cytosol 56.17 58.31
AT3G13170.1 Thale cress cytosol 54.07 56.91
CDY24207 Canola cytosol 54.07 56.91
CDY43366 Canola cytosol 54.07 56.91
Bra039374.1-P Field mustard cytosol 53.28 56.08
GSMUA_Achr10P... Banana plasma membrane 24.93 51.08
Solyc07g065440.2.1 Tomato nucleus 19.68 51.02
PGSC0003DMT400057070 Potato mitochondrion 23.36 48.37
Solyc07g065430.2.1 Tomato cytosol 33.33 33.16
Os03t0284800-01 Rice nucleus 32.28 27.83
Os08t0156900-01 Rice cytosol 23.88 23.64
Os12t0622500-01 Rice nucleus 23.88 18.69
Protein Annotations
Gene3D:1.10.10.10MapMan:13.3.6.2.1.1Gene3D:3.40.1360.10EntrezGene:9267055ProteinID:AAP68363.1ProteinID:AAR87259.1
EMBL:AB219537ProteinID:ABF98916.1ProteinID:BAH92371.1ProteinID:BAS86422.1ProteinID:EEE59941.1GO:GO:0000003
GO:GO:0000166GO:GO:0000228GO:GO:0000706GO:GO:0000724GO:GO:0000737GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003918GO:GO:0004518GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005694
GO:GO:0006139GO:GO:0006259GO:GO:0006950GO:GO:0007049GO:GO:0007129GO:GO:0007131
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0016853GO:GO:0016889GO:GO:0042138GO:GO:0046872GO:GO:0051026EMBL:GU170363
InterPro:IPR036388InterPro:Meiotic_Spo11EnsemblPlantsGene:Os03g0752200EnsemblPlants:Os03t0752200-01PFAM:PF04406PRINTS:PR01550
PRINTS:PR01551PANTHER:PTHR10848PANTHER:PTHR10848:SF3UniProt:Q7Y021SUPFAM:SSF56726InterPro:Spo11/TopoVI_A
InterPro:Spo11/TopoVI_A_NInterPro:Spo11/TopoVI_A_sfInterPro:TOPRIM_Topo6A/Spo11UniParc:UPI00001A96EDInterPro:WH-like_DNA-bd_sfRefSeq:XP_015630524.1
SEG:seg:::::
Description
TOPOISOMERASE 6 SUBUNIT A1Similar to AtSPO11-1. (Os03t0752200-01)
Coordinates
chr3:+:31009978..31013895
Molecular Weight (calculated)
43562.9 Da
IEP (calculated)
8.516
GRAVY (calculated)
-0.072
Length
381 amino acids
Sequence
(BLAST)
001: MAGREKRRRV AALDGEERRR RQEEAATLLH RIRGLVRWVV AEVAAGRSPT VALHRYQNYC SSASAAAASP CACSYDVPVG TDVLSLLHRG SHASRLNVLL
101: RVLLVVQQLL QQNKHCSKRD IYYMYPSIFQ EQAVVDRAIN DICVLFKCSR HNLNVVPVAK GLVMGWIRFL EGEKEVYCVT NVNAAFSIPV SIEAIKDVVS
201: VADYILIVEK ETVFQRLAND KFCERNRCIV ITGRGYPDIP TRRFLRYLVE QLHLPVYCLV DADPYGFDIL ATYKFGSLQL AYDANFLRVP DIRWLGVFTS
301: DFEDYRLPDC CLLHLSSEDR RKAEGILSRC YLHREAPQWR LELEAMLQKG VKFEIEALSA CSISFLSEEY IPKKIKQGRH I
Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)
001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP
Arabidopsis Description
SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.