Factsheet for Solyc07g065440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114040.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	Solyc03g114040.2.1	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057070	Potato	mitochondrion	91.84	73.37
VIT_19s0015g00280.t01	Wine grape	cytosol	75.51	30.75
GSMUA_Achr10P...	Banana	plasma membrane	34.01	26.88
CDY24207	Canola	cytosol	65.99	26.8
CDY43366	Canola	cytosol	65.99	26.8
Bra039374.1-P	Field mustard	cytosol	64.63	26.24
KRH73898	Soybean	cytosol	63.95	25.61
AT3G13170.1	Thale cress	cytosol	62.59	25.41
EER93438	Sorghum	nucleus	52.38	20.1
Os03t0752200-01	Rice	nucleus	51.02	19.68
TraesCS5D01G401100.1	Wheat	nucleus	51.7	19.64
TraesCS5B01G396300.1	Wheat	nucleus	50.34	19.17
TraesCS5A01G391400.2	Wheat	nucleus	50.34	18.55
Solyc08g081590.1.1	Tomato	nucleus	20.41	11.95
Solyc09g007210.2.1	Tomato	nucleus	21.77	11.94
GSMUA_Achr10P...	Banana	nucleus	1.36	1.82
Solyc07g065430.2.1	Tomato	cytosol	1.36	0.52

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	GO:GO:0000003	GO:GO:0000166	GO:GO:0000228	GO:GO:0000706
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918
GO:GO:0004518	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016889	GO:GO:0042138	InterPro:IPR036388	UniProt:K4CHM2	PFAM:PF04406
PRINTS:PR01550	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF56726	EnsemblPlantsGene:Solyc07g065440.2	EnsemblPlants:Solyc07g065440.2.1
InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	UniParc:UPI000276AC54	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr7:-:67193669..67196254

Molecular Weight (calculated)

16727.5 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.298

Length

147 amino acids

Sequence
(BLAST)

001: MEGKRSNTRP LTLLRKIKGF TRSIVEDLAR GRPPLIYIER FRNYCTDTSG NCSCSSGLST GKEAISLKRE CHARRLDVML RVLLIVQQLL QENRHGSKRD
101: IYYMHPTVFK EQSVVDRAIN DICILLQCSR HNLNVVSVGN GCVPLHS

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.