Factsheet for Solyc09g007210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g014490.2.1
Solyc09g007210.2.1
Solyc11g028300.1.1
Solyc11g028330.1.1
Solyc11g028340.1.1
Solyc11g028350.1.1
Solyc12g036030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	Solyc01g014490.2.1	AT3G20780.1	11410368
AT5G02820.1	Solyc11g028300.1.1	AT3G20780.1	11410368
AT5G02820.1	Solyc11g028330.1.1	AT3G20780.1	11410368
AT5G02820.1	Solyc11g028340.1.1	AT3G20780.1	11410368
AT5G02820.1	Solyc11g028350.1.1	AT3G20780.1	11410368
AT5G02820.1	Solyc12g036030.1.1	AT3G20780.1	11410368
AT5G02820.1	Solyc01g014490.2.1	AT3G20780.1	16339310
AT5G02820.1	Solyc11g028300.1.1	AT3G20780.1	16339310
AT5G02820.1	Solyc11g028330.1.1	AT3G20780.1	16339310
AT5G02820.1	Solyc11g028340.1.1	AT3G20780.1	16339310
AT5G02820.1	Solyc11g028350.1.1	AT3G20780.1	16339310
AT5G02820.1	Solyc12g036030.1.1	AT3G20780.1	16339310
AT5G02820.1	Solyc09g007210.2.1	AT5G02820.1	16339310
AT5G02820.1	Solyc09g007210.2.1	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071721	Potato	nucleus	99.63	63.72
VIT_08s0040g03250.t01	Wine grape	nucleus	77.61	49.52
KRH32381	Soybean	nucleus	77.24	49.4
KRH19789	Soybean	nucleus	76.87	49.4
Bra009564.1-P	Field mustard	nucleus	76.12	47.55
CDX70343	Canola	nucleus	75.75	47.54
CDY10421	Canola	nucleus	75.37	47.31
AT5G02820.1	Thale cress	nucleus	75.37	47.31
EER95053	Sorghum	plastid	62.69	38.53
Zm00001d028705_P001	Maize	plastid	61.94	38.07
Os03t0284800-01	Rice	nucleus	61.57	37.33
TraesCS4B01G198400.1	Wheat	nucleus, plastid	60.45	36.73
TraesCS4D01G199200.1	Wheat	nucleus, plastid	60.45	36.73
TraesCS4A01G105600.1	Wheat	nucleus	60.07	36.51
HORVU4Hr1G057310.1	Barley	nucleus, plastid	59.33	33.47
Solyc07g065440.2.1	Tomato	nucleus	11.94	21.77
Solyc08g081590.1.1	Tomato	nucleus	17.91	19.12
Solyc07g065430.2.1	Tomato	cytosol	8.21	5.74

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000003	GO:GO:0000166	GO:GO:0000228
GO:GO:0000706	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003918	GO:GO:0004518	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259
GO:GO:0006265	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009957	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016889
GO:GO:0030154	GO:GO:0042138	GO:GO:0042802	InterPro:IPR036388	UniProt:K4CQB1	PFAM:PF04406
PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848	PANTHER:PTHR10848:SF0	SUPFAM:SSF56726	EnsemblPlantsGene:Solyc09g007210.2
EnsemblPlants:Solyc09g007210.2.1	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TopoVI_A	UniParc:UPI000276B70C
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:827489..828966

Molecular Weight (calculated)

29432.2 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.144

Length

268 amino acids

Sequence
(BLAST)

001: MADKKKRRRA AHDSDSDSES RPFQSKLKPD SVILQTLKAL KSSCSTTSKT LSLSDVGLSS TCREVADLPI DEVQSEIESL AFTIAKSILS GEGFSFSVPS
101: RAAANQLYVS ELDRIVLKDK SSARNFGNVS TVRKATITLR ILQLVHQLCT SNIHVTKRDL FYTDVKLFQD QTQSDAVLDD VSCIVGCTRS SLNVVAAEKG
201: VVVGRLIFSD NGDMIDCTKM GMGGKAIPPN IDRVGDMQSD ALYILLVEKD AYLSEVYLPL KLQEQDWL

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.