Factsheet for Solyc08g081590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g014490.2.1
Solyc11g028300.1.1
Solyc11g028330.1.1
Solyc11g028340.1.1
Solyc11g028350.1.1
Solyc12g036030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	Solyc01g014490.2.1	AT3G20780.1	11410368
AT1G63990.1	Solyc11g028300.1.1	AT3G20780.1	11410368
AT1G63990.1	Solyc11g028330.1.1	AT3G20780.1	11410368
AT1G63990.1	Solyc11g028340.1.1	AT3G20780.1	11410368
AT1G63990.1	Solyc11g028350.1.1	AT3G20780.1	11410368
AT1G63990.1	Solyc12g036030.1.1	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	48.61	57.01
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	75.3	49.61
KRH27888	Soybean	nucleus, plasma membrane, plastid	69.32	45.55
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	67.73	44.39
CDY34392	Canola	cytosol, nucleus, peroxisome	66.53	43.95
CDY25553	Canola	cytosol, nucleus, peroxisome	66.14	43.68
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	65.74	43.42
TraesCS7B01G201200.1	Wheat	cytosol	60.96	39.64
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	60.16	39.53
TraesCS7D01G296000.2	Wheat	nucleus	60.56	39.38
Os08t0156900-01	Rice	cytosol	58.57	38.18
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	61.75	38.18
Zm00001d049550_P001	Maize	cytosol	52.99	37.15
TraesCS7A01G300300.1	Wheat	nucleus	50.6	35.38
GSMUA_AchrUn_...	Banana	plasma membrane	62.15	26.26
Solyc07g065440.2.1	Tomato	nucleus	11.95	20.41
Solyc09g007210.2.1	Tomato	nucleus	19.12	17.91
Solyc07g065430.2.1	Tomato	cytosol	9.16	6.01

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000003	GO:GO:0000166	GO:GO:0000228
GO:GO:0000706	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003918	GO:GO:0004518	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009553	GO:GO:0009555	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016889	GO:GO:0042138	GO:GO:0048316	GO:GO:0051026	GO:GO:0051321	InterPro:IPR036388
UniProt:K4CPF5	PFAM:PF04406	PRINTS:PR01550	PANTHER:PTHR10848	PANTHER:PTHR10848:SF1	SUPFAM:SSF56726
EnsemblPlantsGene:Solyc08g081590.1	EnsemblPlants:Solyc08g081590.1.1	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	UniParc:UPI000276C0DC
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:64597619..64599821

Molecular Weight (calculated)

28198.0 Da

IEP (calculated)

7.635

GRAVY (calculated)

0.012

Length

251 amino acids

Sequence
(BLAST)

001: MGEFCRSTIF FSDQHLCYAD ILPSSQVRAR IEVAVLNFLK ALSSNSPSIS DLSLISRNSS NSRVSRGLLT GDSWIFLSHS FCTRSLTREN SAKSFIRVWK
101: VMEMCYQILV QEKRVTQREL YYKLLCDSPD YFTSQLQVNR TIQDLVALLR CSRYSLGIMA SSRGAIAGRL LLQEPDKEVI DCSACGSSGY AISGDLELLE
201: KLTMETDARY IIMVEKRLAE DRVFNHIPCI LITAKGFPDI VSASSNMSDV P

Best Arabidopsis Sequence Match ( AT1G63990.2 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD W

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.