Factsheet for GSMUA_AchrUn_randomP04110_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P09300_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	GSMUA_Achr1P09300_001	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G296000.2	Wheat	nucleus	45.62	70.21
TraesCS7B01G201200.1	Wheat	cytosol	45.29	69.69
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	44.44	69.11
Os08t0156900-01	Rice	cytosol	44.78	69.09
TraesCS7A01G300300.1	Wheat	nucleus	40.91	67.69
KRH27888	Soybean	nucleus, plasma membrane, plastid	43.27	67.28
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	45.96	67.24
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	42.93	66.93
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	41.41	64.23
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	40.4	63.16
CDY34392	Canola	cytosol, nucleus, peroxisome	40.4	63.16
Zm00001d049550_P001	Maize	cytosol	37.71	62.57
CDY25553	Canola	cytosol, nucleus, peroxisome	39.9	62.37
Solyc08g081590.1.1	Tomato	nucleus	26.26	62.15
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	18.35	50.93
GSMUA_Achr10P...	Banana	plasma membrane	7.74	24.73
GSMUA_Achr10P...	Banana	nucleus	4.55	24.55

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.30.40.10	Gene3D:3.40.1360.10	GO:GO:0000166	GO:GO:0000737
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG04110_001	EnsemblPlants:GSMUA_AchrUn_randomP04110_001
EnsemblPlants:GSMUA_AchrUn_randomT04110_001	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036388	UniProt:M0U673	PFAM:PF04406
PFAM:PF13639	PRINTS:PR01550	PFscan:PS50089	PANTHER:PTHR10848	PANTHER:PTHR10848:SF1	SMART:SM00184
SUPFAM:SSF56726	SUPFAM:SSF57850	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11
UniParc:UPI000295C6B4	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Meiotic recombination protein SPO11-2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04110_001]

Coordinates

chrchrUn_random:+:17853921..17860441

Molecular Weight (calculated)

66663.1 Da

IEP (calculated)

8.229

GRAVY (calculated)

0.167

Length

594 amino acids

Sequence
(BLAST)

001: MGFPSVCYCV ILPKPLLLVV QLVDLVVSFT ISCLGLCPPQ EDSAYPSPAT AVHPSVIKRS LPIVEFSTPR RSPVPLEGDE AVCAVCLGTL EEGDEVRELG
101: NCCHAFHRLC IDKWVDMGRV TCPLCRTQLL PRGRAEKQQL VMAVEFINIY QIVTFFIMTK WILVMPKSGS GSIIRVGGWK IRIRVDSSEW VFASPSHYKI
201: GICSDTTTVR VEMEPDLLKS SLFHADQRLC SAEILPPSQV RARIEVAVLN FLKNLTASNP AISDLPLISR KYDNSGLRHG LLSDVSSVFL SHSVCTRSLM
301: KANDAKAFVR VWMVMAMCFR ILVQGKLATQ RELFYKLLCD APEYFRSQRQ VNRTVQDVVA LLRCTRHSLG IMASSRGAVI GRMVLEEPGE QIVDCSMIGH
401: AGYAITGDLC TLSKLVLHSD ARYIIIIEKD AIFQRLAEDH FFNQIPCILI TSKGYPDIAT RFLLHRISQT FPDMTILALM DWNPAGLAIL STYKFGSITT
501: GLESYRYACN VKWLGLRADD LQIIPQQVMM QLKPHEIKTA KSLMSSKLLQ ERYQAELSLM VERGHRAEIE ALYCHGFDFL GKYIAKKIVQ ADYI

Best Arabidopsis Sequence Match ( AT1G63990.1 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.