Factsheet for GSMUA_Achr10P18570_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	GSMUA_Achr5P00720_001	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00280.t01	Wine grape	cytosol	66.36	20.22
Bra039374.1-P	Field mustard	cytosol	64.55	19.61
CDY24207	Canola	cytosol	64.55	19.61
CDY43366	Canola	cytosol	64.55	19.61
KRH73898	Soybean	cytosol	62.73	18.8
AT3G13170.1	Thale cress	cytosol	61.82	18.78
Solyc07g065430.2.1	Tomato	cytosol	60.91	17.49
GSMUA_AchrUn_...	Banana	plasma membrane	24.55	4.55
Solyc07g065440.2.1	Tomato	nucleus	1.82	1.36
PGSC0003DMT400057070	Potato	mitochondrion	0.91	0.54
GSMUA_Achr10P...	Banana	plasma membrane	0.91	0.54

Protein Annotations

Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G18570_001
EnsemblPlants:GSMUA_Achr10P18570_001	EnsemblPlants:GSMUA_Achr10T18570_001	UniProt:M0RJD2	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF56726
InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_sf	UniParc:UPI0002968F90	SEG:seg	:	:

Description

Meiotic recombination protein SPO11-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18570_001]

Coordinates

chr10:+:25221964..25222938

Molecular Weight (calculated)

12928.8 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.195

Length

110 amino acids

Sequence
(BLAST)

001: MVYRFGSMQM AYDANLLRVP EISWLGVFHS DLQKYHLPDR CLLELTSDDK KKAEAMLLRC YLQKEAPKWR MELEVMLQTG VKFEIESLSF NSLSFLSEYI
101: PTKIHDGSYL

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.