Factsheet for VIT_19s0015g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0062g00140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	VIT_05s0062g00140.t01	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065440.2.1	Tomato	nucleus	30.75	75.51
KRH73898	Soybean	cytosol	75.07	73.84
CDY24207	Canola	cytosol	73.13	72.93
PGSC0003DMT400057070	Potato	mitochondrion	37.12	72.83
CDY43366	Canola	cytosol	72.85	72.65
Bra039374.1-P	Field mustard	cytosol	72.58	72.38
AT3G13170.1	Thale cress	cytosol	71.47	71.27
GSMUA_Achr10P...	Banana	nucleus	20.22	66.36
Os03t0752200-01	Rice	nucleus	62.6	59.32
TraesCS5B01G396300.1	Wheat	nucleus	62.33	58.29
TraesCS5D01G401100.1	Wheat	nucleus	62.33	58.14
EER93438	Sorghum	nucleus	61.22	57.7
TraesCS5A01G391400.2	Wheat	nucleus	62.05	56.14
GSMUA_Achr10P...	Banana	plasma membrane	28.53	55.38
Solyc07g065430.2.1	Tomato	cytosol	41.83	39.43
VIT_08s0040g03250.t01	Wine grape	nucleus	32.96	28.33
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	27.42	25.98

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100256655	wikigene:100256655	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	ProteinID:CCB61998
ProteinID:CCB61998.1	UniProt:F6I543	EMBL:FN596747	GO:GO:0000003	GO:GO:0000166	GO:GO:0000228
GO:GO:0000706	GO:GO:0000724	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003918	GO:GO:0004518	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259
GO:GO:0006950	GO:GO:0007049	GO:GO:0007129	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016889	GO:GO:0042138
GO:GO:0051026	InterPro:IPR036388	EntrezGene:LOC100256655	wikigene:LOC100256655	InterPro:Meiotic_Spo11	PFAM:PF04406
PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A
InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI0001985797	ArrayExpress:VIT_19s0015g00280	EnsemblPlantsGene:VIT_19s0015g00280
EnsemblPlants:VIT_19s0015g00280.t01	unigene:Vvi.14569	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002264649	RefSeq:XP_002264649.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:8278980..8284207

Molecular Weight (calculated)

41561.6 Da

IEP (calculated)

7.945

GRAVY (calculated)

-0.147

Length

361 amino acids

Sequence
(BLAST)

001: MEGKRSSSQR SDLLRKIREF TRSILDDLSI GKSPVVLIDR FRNYCTDNTG NCCCSSDLSK GKEILTLQRE CHARRLDVLL RVLLIVQQLL QENRHGSKRD
101: IYYMHPSVFS DQSVVDRAIN DICILLQCSR HNLNVVSVGK GLVMGWLRFL EAGKKFDCIN GPNTAYPVPV HVEEVKDIVS VAQYILVVEK ESVFQRLAND
201: KFCNKNRCIV ITGRGYPDIP TRRFLRLLVE KLHLHVYCLV DCDPYGFDIL TTYRFGSMQM AYDAKFLRVP EIEWLGAFPS DSEKYGLPEP CLLPLTAEDK
301: RKTEAILHRC YLQQELLHWR LELELMLQRG VKFEIEALSV HSLSFLSENY IPSKIQVAEG V

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.