Factsheet for PGSC0003DMT400057070

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063222

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	PGSC0003DMT400063222	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065440.2.1	Tomato	nucleus	73.37	91.84
GSMUA_Achr10P...	Banana	plasma membrane	39.67	39.25
VIT_19s0015g00280.t01	Wine grape	cytosol	72.83	37.12
CDY43366	Canola	cytosol	63.59	32.32
CDY24207	Canola	cytosol	63.04	32.04
Bra039374.1-P	Field mustard	cytosol	61.96	31.49
AT3G13170.1	Thale cress	cytosol	60.87	30.94
KRH73898	Soybean	cytosol	60.33	30.25
EER93438	Sorghum	nucleus	51.63	24.8
TraesCS5D01G401100.1	Wheat	nucleus	51.09	24.29
TraesCS5B01G396300.1	Wheat	nucleus	50.54	24.09
Os03t0752200-01	Rice	nucleus	48.37	23.36
TraesCS5A01G391400.2	Wheat	nucleus	50.0	23.06
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	15.22	13.08
PGSC0003DMT400071721	Potato	nucleus	23.91	10.5
Solyc07g065430.2.1	Tomato	cytosol	15.76	7.57
GSMUA_Achr10P...	Banana	nucleus	0.54	0.91

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	GO:GO:0000003	GO:GO:0000166	GO:GO:0000737	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0007129	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0042138	GO:GO:0051026	InterPro:IPR036388	UniProt:M1C0B8
PFAM:PF04406	EnsemblPlantsGene:PGSC0003DMG401022175	PGSC:PGSC0003DMG401022175	EnsemblPlants:PGSC0003DMT400057070	PRINTS:PR01550	PANTHER:PTHR10848
PANTHER:PTHR10848:SF3	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	UniParc:UPI00029542BF
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Meiotic recombination protein spo11 [Source:PGSC_GENE;Acc:PGSC0003DMG401022175]

Coordinates

chr7:-:55448317..55453918

Molecular Weight (calculated)

20743.4 Da

IEP (calculated)

9.312

GRAVY (calculated)

-0.115

Length

184 amino acids

Sequence
(BLAST)

001: MEGKRSNTQP LTLIRKIKGF TRSIVEDLAR GRAPLIYIDR FRNYCTDTSG NCSCSSGLST GKEAISLKRE CHARRLDVLL RVLVIVQQLL QENRHGSKRD
101: IYYMHPTVFK EQSVVDRAIN DICILLQCSR HNLNVVSVGN GLVMGWLRYV ESGRKINCIG NPHTAYPIPV LVEEVDGILM SLSV

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.