Factsheet for TraesCS5B01G396300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G275100.2
TraesCS2B01G292500.2
TraesCS2B01G292600.1
TraesCS2D01G274100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	TraesCS2A01G275100.2	AT4G14180.1	17762870
AT3G13170.1	TraesCS2B01G292500.2	AT4G14180.1	17762870
AT3G13170.1	TraesCS2B01G292600.1	AT4G14180.1	17762870
AT3G13170.1	TraesCS2D01G274100.1	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G401100.1	Wheat	nucleus	96.37	96.12
TraesCS5A01G391400.2	Wheat	nucleus	98.19	94.99
Os03t0752200-01	Rice	nucleus	79.27	80.31
EER93438	Sorghum	nucleus	77.46	78.07
VIT_19s0015g00280.t01	Wine grape	cytosol	58.29	62.33
KRH73898	Soybean	cytosol	54.92	57.77
AT3G13170.1	Thale cress	cytosol	53.37	56.91
CDY24207	Canola	cytosol	53.11	56.63
CDY43366	Canola	cytosol	53.11	56.63
Bra039374.1-P	Field mustard	cytosol	52.59	56.08
GSMUA_Achr10P...	Banana	plasma membrane	25.91	53.76
PGSC0003DMT400057070	Potato	mitochondrion	24.09	50.54
Solyc07g065440.2.1	Tomato	nucleus	19.17	50.34
Solyc07g065430.2.1	Tomato	cytosol	32.38	32.64
TraesCS4B01G198400.1	Wheat	nucleus, plastid	30.05	26.3
TraesCS7B01G201200.1	Wheat	cytosol	23.06	23.06

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	GO:GO:0000003	GO:GO:0000166	GO:GO:0000724
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0007049	GO:GO:0007129	GO:GO:0007131
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0042138
GO:GO:0051026	InterPro:IPR036388	InterPro:Meiotic_Spo11	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01551
PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf
InterPro:TOPRIM_Topo6A/Spo11	EnsemblPlantsGene:TraesCS5B01G396300	EnsemblPlants:TraesCS5B01G396300.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd00223	SEG:seg

Description

No Description!

Coordinates

chr5B:+:573221684..573225611

Molecular Weight (calculated)

43949.6 Da

IEP (calculated)

8.264

GRAVY (calculated)

0.003

Length

386 amino acids

Sequence
(BLAST)

001: MAGSGKRRRA TVLDDDERRG RRRLEEAALL LHKIKGLVGW VVAEISAGRS PSLALHRYQN YCACASAAAA ASPSTCACSY DAPVGTDVLS LLRKEFHASR
101: LNVLLRVLLV VQQLLQENKH CSKRDIYYMY PSMFVEQAIV DRAINDICIL FKCSRHNLNV VPVAKGLVMG WIRFVEGEKK VYCITNVNTA FPIPVSIEAI
201: KDVVSVAHYI LVVEKEAVFQ RLANDKFCEK NRCIVITGRG YPDIPTRRFL RYLVEQLHLP AYCLVDSDPY GFDILATYKF GSMQLAYDAN ILRVPEIRWL
301: GVFTSDFEEY CLPDCCQLQL SSEDRRKLEG ILTRCYLHKE APEWRLKLEA MLEMGVKFEI EALSASSISF LSQEYIPQQI RLGRYI

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.