Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 85.04 | 93.81 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 98.6 | 92.88 |
| TraesCS2B01G292600.1 | Wheat | plastid | 10.6 | 90.67 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 13.17 | 80.86 |
| Zm00001d046970_P002 | Maize | plastid | 72.64 | 71.8 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 23.77 | 71.6 |
| OQU76853 | Sorghum | plasma membrane | 58.38 | 70.93 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 47.16 | 46.08 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 40.45 | 41.35 |
| KRH31552 | Soybean | cytosol | 39.13 | 38.85 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 10.37 | 37.36 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 37.88 | 36.24 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 37.41 | 36.09 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 37.1 | 35.66 |
| CDX90779 | Canola | cytosol | 36.87 | 35.46 |
| Bra000733.1-P | Field mustard | plasma membrane | 32.19 | 34.27 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G275100.2 | EnsemblPlantsGene:TraesCS2A01G275100 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | PANTHER:PTHR36379 |
| SEG:seg | SUPFAM:SSF48371 | MapMan:13.3.6.2.2 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:451807351..451816651
Molecular Weight (calculated)
140802.0 Da
IEP (calculated)
4.783
GRAVY (calculated)
0.345
Length
1283 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESDGEHSPP HACGAGHRAS HSLPTSAGGS VCVSCAAALL SSASAPSHHV SHVLASLSLA LADPAFLAPL RAAHPRLLAV PLVEALAGAA ARRDAALATQ
0101: ASDLASDLAS AVGPPAASEL VARLAHVLSS GSLVKHFHML HCLGFLLNSI KGAAAYIGDA VSLFLNLVNN LRLPSDEIRG EILFVLYKLS LLNATPWDNI
0201: CDNDNVDLSA VGKSLLQLSL EVLLKTQNDA VRLNCIAFLL ALAKKEAFDI LLIGDLSLIK SVEEEESTQT DDVPPNASII VLFADAVKGS LLSTNLEVQT
0301: GTLDLIFHFL SSDANICAVL QTLIDENVAD YVFEVLRLSG NNDPLVISSI QVLSLLATSE EMFKEKLAIG FSTLLPVLHY VTEIPFHPVQ SQVLRLVWTC
0401: IANCSGILSL SQEEQIACTL TLILRRNDSG ELGMCSETFA LVCSILIEIM RSPSAHDIQK LPLLIEEASK HAISSTLPHA YDSAFLVPHS LCLLKEALIF
0501: CLEGNTDKIS VKKDLEDSVI EICGTYLLHW LESAVVDGND DETLGEILQI FHIILSSTCH NKQLKFAEML ASSSWFSLSF GFMGLFPTDH VKSVVYLITS
0601: SIVDKILGCK YGETIRDAYV YLPSDPTELA YLLGQCSSED FNLASCQCAI LVILYACSFY NERLVADSQL LSSVEQYILL NGAKFPYEIA GSVMLTLLVH
0701: LYAFVRGISF GCTIQHSPEA ERTLFHVMAC KEWDLLFIRV HPIALKWLFQ KVELLEPLSF QMLNFCRTFC EDRTVVLLNS SQLVDIKMVA ELVFSGETSL
0801: SSLLVSLLNQ IIKDGTEDEV FSVVNVIAEI LVISPCSSSH FTSSGVIDAV GSIYCSPYSS RIKTVCSLLI FNILYSASAL TVYWEDEWLA LTMKLLEYFN
0901: SSLDYTSSDQ EQKILIGIFC LILHHSASKV LIEPAKAIIL NKPLVSLTDG IIQEACAKGP SLLQYNQETD FGGFMILILQ LMFFSLRSLH AILDPSIDWQ
1001: EFLQHSDNTQ FFSVVGIPCH DLCRLMHFGP YPVKLIASQC LLELLTRISD QRSYLNAELR CSAQYMKSII AVIEGLVLSQ DSRVAENCGS CLSMILGWEK
1101: FGSQENMVGR ESKWSRLIME EFAVALTAPG LTSKSFSNQQ KIASNIAVSL LKLSQVPEWL TSLFDSSLIS GVVGNLSARN VTADIVKLFS ELMTKKYLTQ
1201: EHIVSLHNLF QVCRRQVYEG SCSKSELSEQ KAEETVARSP DEVCALLFGI VLNQRTASCT LQMEQQNLLR EIDLFFQESS QGE
0101: ASDLASDLAS AVGPPAASEL VARLAHVLSS GSLVKHFHML HCLGFLLNSI KGAAAYIGDA VSLFLNLVNN LRLPSDEIRG EILFVLYKLS LLNATPWDNI
0201: CDNDNVDLSA VGKSLLQLSL EVLLKTQNDA VRLNCIAFLL ALAKKEAFDI LLIGDLSLIK SVEEEESTQT DDVPPNASII VLFADAVKGS LLSTNLEVQT
0301: GTLDLIFHFL SSDANICAVL QTLIDENVAD YVFEVLRLSG NNDPLVISSI QVLSLLATSE EMFKEKLAIG FSTLLPVLHY VTEIPFHPVQ SQVLRLVWTC
0401: IANCSGILSL SQEEQIACTL TLILRRNDSG ELGMCSETFA LVCSILIEIM RSPSAHDIQK LPLLIEEASK HAISSTLPHA YDSAFLVPHS LCLLKEALIF
0501: CLEGNTDKIS VKKDLEDSVI EICGTYLLHW LESAVVDGND DETLGEILQI FHIILSSTCH NKQLKFAEML ASSSWFSLSF GFMGLFPTDH VKSVVYLITS
0601: SIVDKILGCK YGETIRDAYV YLPSDPTELA YLLGQCSSED FNLASCQCAI LVILYACSFY NERLVADSQL LSSVEQYILL NGAKFPYEIA GSVMLTLLVH
0701: LYAFVRGISF GCTIQHSPEA ERTLFHVMAC KEWDLLFIRV HPIALKWLFQ KVELLEPLSF QMLNFCRTFC EDRTVVLLNS SQLVDIKMVA ELVFSGETSL
0801: SSLLVSLLNQ IIKDGTEDEV FSVVNVIAEI LVISPCSSSH FTSSGVIDAV GSIYCSPYSS RIKTVCSLLI FNILYSASAL TVYWEDEWLA LTMKLLEYFN
0901: SSLDYTSSDQ EQKILIGIFC LILHHSASKV LIEPAKAIIL NKPLVSLTDG IIQEACAKGP SLLQYNQETD FGGFMILILQ LMFFSLRSLH AILDPSIDWQ
1001: EFLQHSDNTQ FFSVVGIPCH DLCRLMHFGP YPVKLIASQC LLELLTRISD QRSYLNAELR CSAQYMKSII AVIEGLVLSQ DSRVAENCGS CLSMILGWEK
1101: FGSQENMVGR ESKWSRLIME EFAVALTAPG LTSKSFSNQQ KIASNIAVSL LKLSQVPEWL TSLFDSSLIS GVVGNLSARN VTADIVKLFS ELMTKKYLTQ
1201: EHIVSLHNLF QVCRRQVYEG SCSKSELSEQ KAEETVARSP DEVCALLFGI VLNQRTASCT LQMEQQNLLR EIDLFFQESS QGE
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.