Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0062g00140.t01 | |
| VIT_19s0015g00280.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | VIT_19s0015g00280.t01 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | VIT_05s0062g00140.t01 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31552 | Soybean | cytosol | 56.1 | 54.49 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 51.55 | 48.65 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 51.47 | 48.17 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 13.47 | 47.47 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 49.0 | 46.84 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 49.4 | 46.44 |
| CDX90779 | Canola | cytosol | 49.08 | 46.18 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 7.65 | 45.93 |
| Bra000733.1-P | Field mustard | plasma membrane | 43.74 | 45.56 |
| TraesCS2A01G275100.2 | Wheat | plastid | 41.35 | 40.45 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 37.37 | 40.33 |
| OQU76853 | Sorghum | plasma membrane | 33.23 | 39.49 |
| Zm00001d046970_P002 | Maize | plastid | 40.56 | 39.21 |
| TraesCS2B01G292500.2 | Wheat | plasma membrane | 37.53 | 39.05 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 41.35 | 38.11 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 12.67 | 37.32 |
| TraesCS2B01G292600.1 | Wheat | plastid | 4.06 | 34.0 |
Protein Annotations
| ArrayExpress:VIT_05s0062g00140 | EMBL:FN596745 | EnsemblPlants:VIT_05s0062g00140.t01 | EnsemblPlantsGene:VIT_05s0062g00140 | GO:GO:0003674 | GO:GO:0005488 |
| InterPro:ARM-type_fold | PANTHER:PTHR36379 | ProteinID:CCB61760 | ProteinID:CCB61760.1 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI000210AAF4 | UniProt:F6I4C3 | MapMan:13.3.6.2.2 | : | : | : |
Description
No Description!
Coordinates
chr5:+:18289791..18297376
Molecular Weight (calculated)
140388.0 Da
IEP (calculated)
5.225
GRAVY (calculated)
0.223
Length
1255 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMLEEEEEEV YPATCSQGHR STLILQTMEG GRICLICFTN LLSNPTSPTF HVSHALSQLS HALSHPPFLH SLLSHHPHLL VSPLLHSLSF FNDHSIASQI
0101: IHLVLFLSNS SHSSSLYGEF VSRIASILSG SKLHWSPRQA SMLHCLGVLL NCETNNPYAH IKDKSALVFN LVAGLQLPSE EIQGEILFVL YKLSILQYAS
0201: EEGDGSDLLF SFCPKLLHLS MEALMKTQSD DVRLNCVALL TVLAQRGYFE NAFANDISIR DCCEADNFME VTEHEKDVLP LNILFAEAIK GPLLSSDSQL
0301: QLGALDLIFY YLSWERGSSK RIQVLVEENI ADYVFEILRL SECKDPVVNS CLRVLDLLSI AEHAFGQRLA IGFTTLLPVL QYVVEVPFHP VQTPTLKLIR
0401: NCILNYPGMV SITQIEEIGL ILTRMLRRHI NGDVDMLPET LIIACSILVD LMKSPSSHEA LTLRTIVQES VRHAILASLC LYEKHPNQIL HSLYLLKEAY
0501: AFSHEGNSTK NEANLELGNC IIDVCRTHLL PWFATAINEM EYEEIVLGVL EAFHSVLLQD SYAQAKEFVM ILVSSSWFSL SFGCLGLFPS EKMKWRVYLM
0601: FSSIVDVLLG NESGQPIRDA ALYLPSDPSD LLFLLGQKST QNLELLSCQS AVLLILYTSS LYDERLADEK LVLASLEQYI LVNNSDLLCG AADSVSITRL
0701: MNLYGLYRGL AKVGYQIPYS PEAERILFEL VAQNEWDLSS ATINFTSLKW LFQQEKIIKP LSYQILKFCR NNSSSGSHII IHGNDSQNID VQGLAKLVAA
0801: GDNLGAVLLV SLLQQLIEEE GNECDIISVV NLMVDIINIF PAASDQLSMH GIGNGIQDLF SHSSHSLSQQ MFVAIAILIF DILWSVQPET LSDGETWLSV
0901: TMKLMGYLIP MVTAGGWTQE SLLVLGILSL ILHHSTNQAL VEASKAILLN DSLVSMINNV IHTSCSKGPA LIEDDEETRN GETLTFVLLL HFFSCRRLMH
1001: FGSPLVKLVA SYCLMELFTR ITDLRNRKHD ELKWNMGHLI SVMAILEGLV FYSDIRVAMN CALCLSMILG WEKLWMQDTK VIGRCNWCRL IVEELAMSLA
1101: VPSLASKSFM NHHKPAVHVA VALLKLHSIP GWMKSVFDDS CISGIIENLS VSNVSMETVL LFRELLNHEY LKDEQIACLN RVFQACRKHI YSGNTQDESR
1201: EENIEKVIAL PDDLGKACEF LIHLMSSNSS AHKGSKRLLE EIEMFSKSLT LENDG
0101: IHLVLFLSNS SHSSSLYGEF VSRIASILSG SKLHWSPRQA SMLHCLGVLL NCETNNPYAH IKDKSALVFN LVAGLQLPSE EIQGEILFVL YKLSILQYAS
0201: EEGDGSDLLF SFCPKLLHLS MEALMKTQSD DVRLNCVALL TVLAQRGYFE NAFANDISIR DCCEADNFME VTEHEKDVLP LNILFAEAIK GPLLSSDSQL
0301: QLGALDLIFY YLSWERGSSK RIQVLVEENI ADYVFEILRL SECKDPVVNS CLRVLDLLSI AEHAFGQRLA IGFTTLLPVL QYVVEVPFHP VQTPTLKLIR
0401: NCILNYPGMV SITQIEEIGL ILTRMLRRHI NGDVDMLPET LIIACSILVD LMKSPSSHEA LTLRTIVQES VRHAILASLC LYEKHPNQIL HSLYLLKEAY
0501: AFSHEGNSTK NEANLELGNC IIDVCRTHLL PWFATAINEM EYEEIVLGVL EAFHSVLLQD SYAQAKEFVM ILVSSSWFSL SFGCLGLFPS EKMKWRVYLM
0601: FSSIVDVLLG NESGQPIRDA ALYLPSDPSD LLFLLGQKST QNLELLSCQS AVLLILYTSS LYDERLADEK LVLASLEQYI LVNNSDLLCG AADSVSITRL
0701: MNLYGLYRGL AKVGYQIPYS PEAERILFEL VAQNEWDLSS ATINFTSLKW LFQQEKIIKP LSYQILKFCR NNSSSGSHII IHGNDSQNID VQGLAKLVAA
0801: GDNLGAVLLV SLLQQLIEEE GNECDIISVV NLMVDIINIF PAASDQLSMH GIGNGIQDLF SHSSHSLSQQ MFVAIAILIF DILWSVQPET LSDGETWLSV
0901: TMKLMGYLIP MVTAGGWTQE SLLVLGILSL ILHHSTNQAL VEASKAILLN DSLVSMINNV IHTSCSKGPA LIEDDEETRN GETLTFVLLL HFFSCRRLMH
1001: FGSPLVKLVA SYCLMELFTR ITDLRNRKHD ELKWNMGHLI SVMAILEGLV FYSDIRVAMN CALCLSMILG WEKLWMQDTK VIGRCNWCRL IVEELAMSLA
1101: VPSLASKSFM NHHKPAVHVA VALLKLHSIP GWMKSVFDDS CISGIIENLS VSNVSMETVL LFRELLNHEY LKDEQIACLN RVFQACRKHI YSGNTQDESR
1201: EENIEKVIAL PDDLGKACEF LIHLMSSNSS AHKGSKRLLE EIEMFSKSLT LENDG
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.