Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 3
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400057070 | |
| PGSC0003DMT400063222 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | PGSC0003DMT400057070 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | PGSC0003DMT400063222 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 35.96 | 30.05 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 92.42 | 24.53 |
| OQU76853 | Sorghum | plasma membrane | 40.17 | 13.54 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 47.47 | 13.47 |
| KRH31552 | Soybean | cytosol | 44.94 | 12.38 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 37.92 | 11.61 |
| Bra000733.1-P | Field mustard | plasma membrane | 37.64 | 11.12 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 40.73 | 11.04 |
| TraesCS2B01G292500.2 | Wheat | plasma membrane | 37.08 | 10.95 |
| Zm00001d046970_P002 | Maize | plastid | 39.04 | 10.71 |
| TraesCS2A01G275100.2 | Wheat | plastid | 37.36 | 10.37 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 38.2 | 10.23 |
| CDX90779 | Canola | cytosol | 38.2 | 10.19 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 37.36 | 9.96 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 37.08 | 9.69 |
| TraesCS2B01G292600.1 | Wheat | plastid | 2.25 | 5.33 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400063222 | EnsemblPlantsGene:PGSC0003DMG400024589 | PANTHER:PTHR36379 | PGSC:PGSC0003DMG400024589 | SEG:seg | UniParc:UPI000295AE2C |
| UniProt:M1CA99 | MapMan:13.3.6.2.2 | : | : | : | : |
Description
Protein PRD1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024589]
Coordinates
chr3:-:53906159..53907939
Molecular Weight (calculated)
40339.2 Da
IEP (calculated)
5.666
GRAVY (calculated)
0.157
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEASKTIIL STHLLSLVNT TITNACSKGP SLIEQDEGTR SVEALVFVLS LLFFSLRSVH AILPGIVDCQ YLLDPTNIPQ PWPYISIQCH DLCKLLHFGS
101: IPIKLLSSQY LLELFSGIED ERSRKSDTLE FRTNYLLSIM AVLEGQIFSS DMSVAMNCSL CLSMLIGWQD VETEVSAIQR NNWCRFIVEE LVMSLAAPSL
201: ASKSFMIHHK PAIHIAVELL RRKKVPQWMT SIFNESCIFA IIRNITNSNL SAELVFLLRK LLNYGFLNDE QIAALNQVFQ ECRKCIYTDK LQRTGEEEKT
301: WNVAAASDYV GKVCQFLISL ITTQPSSVME SSRFQSGKRE LLEEIDLFSK CLMRED
101: IPIKLLSSQY LLELFSGIED ERSRKSDTLE FRTNYLLSIM AVLEGQIFSS DMSVAMNCSL CLSMLIGWQD VETEVSAIQR NNWCRFIVEE LVMSLAAPSL
201: ASKSFMIHHK PAIHIAVELL RRKKVPQWMT SIFNESCIFA IIRNITNSNL SAELVFLLRK LLNYGFLNDE QIAALNQVFQ ECRKCIYTDK LQRTGEEEKT
301: WNVAAASDYV GKVCQFLISL ITTQPSSVME SSRFQSGKRE LLEEIDLFSK CLMRED
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSAEH SFRKRLVIGF PSVIRVLHYV GEVPCHPFQI QTLKLISSCI
0401: SDFPGIASSS QVQEIALVLK KMLERYYSQE MGLFPDAFAI ICSVFVSLMK TPSFGETADV LTSLQESLRH SILASLSLPE KDSTQILHAV YLLNEVYVYC
0501: TASTSINKTI CIELRHCVID VCTSHLLPWF LSDVNEVNEE ATLGIMETFH SILLQNSDIQ AKEFAELLVS ADWFSFSFGC LGNFCTDNMK QRIYLMLSSL
0601: VDILLEQKTG SHIRDALHCL PSDPQDLLFL LGQASSNNQE LASCQSAALL IFHTSSIYND RLADDKLVLA SLEQYIILNK TSLICAISDS PALLNLVNLY
0701: GLCRSLQNER YQISYSLEAE RIIFHLLNEY EWDLGSINIH LESLKWLFQQ ESISKSLIYQ IQKISRNNLI GNEVHNVYGD GRQRSLTYWF AKLISEGDNY
0801: AATLLVNLLT QLAEKEEQEN DVISILNLMN TIVSIFPTAS NNLSMNGIGS VIHRLVSGFS NSSLGTSFRT LLLLVFNILT SVQPAVLMID ESWYAVSIKL
0901: LNFLSLRDTA IKQNHEDMVV IGILSLVLYH SSDGALVEAS RNIVSNSYLV SAINTVVDVA CSKGPALTQC QDETNIGEAL AFTLLLYFFS LRSLQIVLAG
1001: AVDWQTFFGT STSLETLPVV CIHCHNLCRL MHFGAPQIKL IASYCLLELL TGLSEQVDIK KEQLQCSSSY LKSMKAVLGG LVFCDDIRVA TNSALCLSMI
1101: LGWEDMEGRT EMLKTSSWYR FIAEEMSVSL AMPCSASSTY VNHHKPAVYL TVAMLRLKNK PVWLRTVFDE SCISSMIQNL NGINISREIV ILFRELMQAE
1201: LLNSQQVTKL DRAFQECRKQ MHRNGTRDET VEEQVQRKIP SIHDHSEFCN YLVHLMVSNS FGHPSESETY TQKKKQILDE MEQFSELIST REGRVSPIQE
1301: ETRQMQTERI V
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSAEH SFRKRLVIGF PSVIRVLHYV GEVPCHPFQI QTLKLISSCI
0401: SDFPGIASSS QVQEIALVLK KMLERYYSQE MGLFPDAFAI ICSVFVSLMK TPSFGETADV LTSLQESLRH SILASLSLPE KDSTQILHAV YLLNEVYVYC
0501: TASTSINKTI CIELRHCVID VCTSHLLPWF LSDVNEVNEE ATLGIMETFH SILLQNSDIQ AKEFAELLVS ADWFSFSFGC LGNFCTDNMK QRIYLMLSSL
0601: VDILLEQKTG SHIRDALHCL PSDPQDLLFL LGQASSNNQE LASCQSAALL IFHTSSIYND RLADDKLVLA SLEQYIILNK TSLICAISDS PALLNLVNLY
0701: GLCRSLQNER YQISYSLEAE RIIFHLLNEY EWDLGSINIH LESLKWLFQQ ESISKSLIYQ IQKISRNNLI GNEVHNVYGD GRQRSLTYWF AKLISEGDNY
0801: AATLLVNLLT QLAEKEEQEN DVISILNLMN TIVSIFPTAS NNLSMNGIGS VIHRLVSGFS NSSLGTSFRT LLLLVFNILT SVQPAVLMID ESWYAVSIKL
0901: LNFLSLRDTA IKQNHEDMVV IGILSLVLYH SSDGALVEAS RNIVSNSYLV SAINTVVDVA CSKGPALTQC QDETNIGEAL AFTLLLYFFS LRSLQIVLAG
1001: AVDWQTFFGT STSLETLPVV CIHCHNLCRL MHFGAPQIKL IASYCLLELL TGLSEQVDIK KEQLQCSSSY LKSMKAVLGG LVFCDDIRVA TNSALCLSMI
1101: LGWEDMEGRT EMLKTSSWYR FIAEEMSVSL AMPCSASSTY VNHHKPAVYL TVAMLRLKNK PVWLRTVFDE SCISSMIQNL NGINISREIV ILFRELMQAE
1201: LLNSQQVTKL DRAFQECRKQ MHRNGTRDET VEEQVQRKIP SIHDHSEFCN YLVHLMVSNS FGHPSESETY TQKKKQILDE MEQFSELIST REGRVSPIQE
1301: ETRQMQTERI V
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.