Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | CDY24207 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | CDY43366 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | CDX90779 | AT4G14180.1 | 17762870 |
| AT4G14180.1 | CDY05132 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000733.1-P | Field mustard | plasma membrane | 86.21 | 95.44 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 93.33 | 93.26 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 79.31 | 79.55 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 46.18 | 49.08 |
| KRH31552 | Soybean | cytosol | 44.45 | 45.9 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 39.95 | 39.75 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 6.07 | 38.76 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 38.08 | 38.69 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 10.19 | 38.2 |
| TraesCS2B01G292600.1 | Wheat | plastid | 4.2 | 37.33 |
| TraesCS2A01G275100.2 | Wheat | plastid | 35.46 | 36.87 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 11.77 | 36.85 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 32.01 | 36.72 |
| Zm00001d046970_P002 | Maize | plastid | 34.18 | 35.13 |
| TraesCS2B01G292500.2 | Wheat | plasma membrane | 31.48 | 34.83 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 35.53 | 34.8 |
| OQU76853 | Sorghum | plasma membrane | 27.14 | 34.28 |
Protein Annotations
| EnsemblPlants:CDX90779 | EnsemblPlantsGene:GSBRNA2T00151476001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | ncoils:Coil |
| PANTHER:PTHR36379 | ProteinID:CDX90779 | ProteinID:CDX90779.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0004EDB0E6 |
| MapMan:13.3.6.2.2 | : | : | : | : | : |
Description
BnaA03g24590D
Coordinates
chrLK031864:-:464484..469420
Molecular Weight (calculated)
149549.0 Da
IEP (calculated)
5.590
GRAVY (calculated)
0.126
Length
1334 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFFLDSHVQV SDHHLLREPV AADLNHPSPS PPCANGHRST VSLRTDQGGT FCFLCFSDLV SNPRAPTVHV SYALHQLSIA LSEPTFLRTL LSSHVRFLVS
0101: PLVNALSIFD DAPIASQIMD TISLLCSAEE CSIGEEFVEM VSAQLSSGAL GWSRRQLHML HCFGVLLSSE KIDINSHIRD KESLVCLLVE GLQLPSEEIR
0201: GEIFFVLYKF SALQFTEQDV DGAEILSSLS PKLLSLSLEA LAKTQRDEVR LNCIALLTTL AQQGLLANSR TSPVSSMSLD EVDDDPMLTA ETVTVRPCLD
0301: ILFAEAIKGP LLSTDSEVQI KALDLIFHYV SQESVPSKQI EVLVEENVAD YIFEILRLSE CKDHVINPCL RVLDLFSLAE HSFRKKLVIG FPSVIQVLHY
0401: VGEVPCHPFQ VQTLKLVSSC ISDFPGIASS SQVQEVSLVL KMMLERYYSQ EMGLFPDAFA IICSVFVSLM KTPSFAETPD VFKSLQDSLR HAVLVCLSLP
0501: EKDSTQISHA VYFLNEVYAY CTSPTSINNT GCIELRQCVI DVCVSHLLPW FLSDVNEVNE ELILGIMESF HSILLQNSDV QAMEFAEILV SADWFSFAFG
0601: CLGNFSSDKM KQRVYQMLSS LVDVLHRQKL GSHIRDALFC LPSDPQDLLF LLGQDSSNNQ ELASCQFAAL VIFHTGWIHN DRLADDKLVF ASLEQYILVN
0701: RTSLISDSPA VLQLVNLYSI CRSLQNKRYQ ISYSLEAERI VFHLLNEYDW DLGSCDIHLE SLKWLFQQES ISKGLTYQIQ KISRNNLIGK EVHNVYGDGR
0801: QRSLTYWFAK MISEGDNYAA TLLVNLLTHL AENGDKESDV ISILNIMTTV VSKFPTASNH LSMNGIGNAI HRLVCSFRNS SMGTSFPTLL VLIFNILASV
0901: QPGVLKNDES WNAVFIKLLH YLSLRDTAIT QPDHEGMMVI GILCLVLYHS SHGALLDSSR IIMVNSYLVS AINNVVDVAC SRGPALTQSQ DETEIWEALA
1001: FTLPLCFFSL RSLQIVLAGA VDWQTFCGPS SNLETLPVVC IQCHNLCRLM HFGTPQIKLM ASYCLLELFT GLSQQIDIRK EQLRCSSSYL KSMKAVLCGL
1101: VFYDDIRVAT NSALCLSMIM GWEDMEGRTE MLKTSSWYRF ITEEMSVSLA MPCSASITFV NHHKPAVYVT VAMLRHKNKP AWLRSVFDES CISSMIQNLN
1201: GTNISSEIVI LFRELMQAQL LNSDQVTKLN LVFLASRKQM QRNGTLDETV EEQMQRTVSS IHDHGEVCSY LVDMMLSNSF GHTSGSEATC IQKKKQVLAE
1301: MEQFSERLST RRDYVTDSRP CKVYTRQRKR IHAK
0101: PLVNALSIFD DAPIASQIMD TISLLCSAEE CSIGEEFVEM VSAQLSSGAL GWSRRQLHML HCFGVLLSSE KIDINSHIRD KESLVCLLVE GLQLPSEEIR
0201: GEIFFVLYKF SALQFTEQDV DGAEILSSLS PKLLSLSLEA LAKTQRDEVR LNCIALLTTL AQQGLLANSR TSPVSSMSLD EVDDDPMLTA ETVTVRPCLD
0301: ILFAEAIKGP LLSTDSEVQI KALDLIFHYV SQESVPSKQI EVLVEENVAD YIFEILRLSE CKDHVINPCL RVLDLFSLAE HSFRKKLVIG FPSVIQVLHY
0401: VGEVPCHPFQ VQTLKLVSSC ISDFPGIASS SQVQEVSLVL KMMLERYYSQ EMGLFPDAFA IICSVFVSLM KTPSFAETPD VFKSLQDSLR HAVLVCLSLP
0501: EKDSTQISHA VYFLNEVYAY CTSPTSINNT GCIELRQCVI DVCVSHLLPW FLSDVNEVNE ELILGIMESF HSILLQNSDV QAMEFAEILV SADWFSFAFG
0601: CLGNFSSDKM KQRVYQMLSS LVDVLHRQKL GSHIRDALFC LPSDPQDLLF LLGQDSSNNQ ELASCQFAAL VIFHTGWIHN DRLADDKLVF ASLEQYILVN
0701: RTSLISDSPA VLQLVNLYSI CRSLQNKRYQ ISYSLEAERI VFHLLNEYDW DLGSCDIHLE SLKWLFQQES ISKGLTYQIQ KISRNNLIGK EVHNVYGDGR
0801: QRSLTYWFAK MISEGDNYAA TLLVNLLTHL AENGDKESDV ISILNIMTTV VSKFPTASNH LSMNGIGNAI HRLVCSFRNS SMGTSFPTLL VLIFNILASV
0901: QPGVLKNDES WNAVFIKLLH YLSLRDTAIT QPDHEGMMVI GILCLVLYHS SHGALLDSSR IIMVNSYLVS AINNVVDVAC SRGPALTQSQ DETEIWEALA
1001: FTLPLCFFSL RSLQIVLAGA VDWQTFCGPS SNLETLPVVC IQCHNLCRLM HFGTPQIKLM ASYCLLELFT GLSQQIDIRK EQLRCSSSYL KSMKAVLCGL
1101: VFYDDIRVAT NSALCLSMIM GWEDMEGRTE MLKTSSWYRF ITEEMSVSLA MPCSASITFV NHHKPAVYVT VAMLRHKNKP AWLRSVFDES CISSMIQNLN
1201: GTNISSEIVI LFRELMQAQL LNSDQVTKLN LVFLASRKQM QRNGTLDETV EEQMQRTVSS IHDHGEVCSY LVDMMLSNSF GHTSGSEATC IQKKKQVLAE
1301: MEQFSERLST RRDYVTDSRP CKVYTRQRKR IHAK
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.