Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G13170.1 | CDX90779 | AT4G14180.1 | 17762870 |
AT3G13170.1 | CDY05132 | AT4G14180.1 | 17762870 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra039374.1-P | Field mustard | cytosol | 99.17 | 99.17 |
CDY24207 | Canola | cytosol | 98.89 | 98.89 |
AT3G13170.1 | Thale cress | cytosol | 88.67 | 88.67 |
VIT_19s0015g00280.t01 | Wine grape | cytosol | 72.65 | 72.85 |
KRH73898 | Soybean | cytosol | 68.23 | 67.3 |
Solyc07g065440.2.1 | Tomato | nucleus | 26.8 | 65.99 |
GSMUA_Achr10P... | Banana | nucleus | 19.61 | 64.55 |
PGSC0003DMT400057070 | Potato | mitochondrion | 32.32 | 63.59 |
Os03t0752200-01 | Rice | nucleus | 56.91 | 54.07 |
EER93438 | Sorghum | nucleus | 56.91 | 53.79 |
TraesCS5B01G396300.1 | Wheat | nucleus | 56.63 | 53.11 |
TraesCS5D01G401100.1 | Wheat | nucleus | 56.35 | 52.71 |
GSMUA_Achr10P... | Banana | plasma membrane | 26.8 | 52.15 |
TraesCS5A01G391400.2 | Wheat | nucleus | 56.63 | 51.38 |
Solyc07g065430.2.1 | Tomato | cytosol | 38.95 | 36.81 |
CDX70343 | Canola | nucleus | 33.7 | 28.57 |
CDY10421 | Canola | nucleus | 33.43 | 28.34 |
CDY25553 | Canola | cytosol, nucleus, peroxisome | 26.24 | 25.0 |
CDY34392 | Canola | cytosol, nucleus, peroxisome | 26.24 | 25.0 |
Protein Annotations
Gene3D:1.10.10.10 | MapMan:13.3.6.2.1.1 | Gene3D:3.40.1360.10 | GO:A0A078I0K2 | UniProt:A0A078I0K2 | EnsemblPlants:CDY43366 |
ProteinID:CDY43366 | ProteinID:CDY43366.1 | GO:GO:0000166 | GO:GO:0000737 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009056 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00076434001 | InterPro:IPR036388 | InterPro:Meiotic_Spo11 | PFAM:PF04406 |
PRINTS:PR01550 | PRINTS:PR01551 | PANTHER:PTHR10848 | PANTHER:PTHR10848:SF3 | SUPFAM:SSF56726 | InterPro:Spo11/TopoVI_A |
InterPro:Spo11/TopoVI_A_N | InterPro:Spo11/TopoVI_A_sf | InterPro:TOPRIM_Topo6A/Spo11 | UniParc:UPI0004EE4B50 | InterPro:WH-like_DNA-bd_sf | SEG:seg |
Description
BnaA01g29970DBnaA01g29970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0K2]
Coordinates
chrLK032554:+:78636..81315
Molecular Weight (calculated)
41915.0 Da
IEP (calculated)
6.952
GRAVY (calculated)
-0.181
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGNFQISET TNLLRKIKEF TRSIVEDLAE GKSPEISINR FRNYCNDPEA DCFCSSDEPK GREILTLRKR SQTYRIDMLL RVLLIVQQLL QENRHGSKRD
101: IYYMHPSAFK AQSVVDRAIA DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLS SLNTAFPIPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV VTGRGYPDVS TRRFLRLLME KLQLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP EMKWLGAFPS DSDIYGVPQQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRSEGS FH
101: IYYMHPSAFK AQSVVDRAIA DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLS SLNTAFPIPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV VTGRGYPDVS TRRFLRLLME KLQLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP EMKWLGAFPS DSDIYGVPQQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRSEGS FH
001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP
Arabidopsis Description
SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.