CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70343
CDY06380
CDY10421
CDY19605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	CDY06380	AT3G20780.1	11410368
AT5G02820.1	CDY19605	AT3G20780.1	11410368
AT5G02820.1	CDY06380	AT3G20780.1	16339310
AT5G02820.1	CDY19605	AT3G20780.1	16339310
AT5G02820.1	CDX70343	AT5G02820.1	16339310
AT5G02820.1	CDY10421	AT5G02820.1	16339310
AT5G02820.1	CDX70343	AT5G02820.1	21798944
AT5G02820.1	CDY10421	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70343	Canola	nucleus	98.36	98.36
Bra009564.1-P	Field mustard	nucleus	98.59	98.14
AT5G02820.1	Thale cress	nucleus	95.78	95.78
VIT_08s0040g03250.t01	Wine grape	nucleus	84.07	85.48
KRH32381	Soybean	nucleus	82.9	84.49
KRH19789	Soybean	nucleus	82.2	84.17
PGSC0003DMT400071721	Potato	nucleus	81.03	82.58
Solyc09g007210.2.1	Tomato	nucleus	47.31	75.37
EER95053	Sorghum	plastid	68.62	67.2
Zm00001d028705_P001	Maize	plastid	68.15	66.74
Os03t0284800-01	Rice	nucleus	68.62	66.29
TraesCS4B01G198400.1	Wheat	nucleus, plastid	67.92	65.76
TraesCS4D01G199200.1	Wheat	nucleus, plastid	67.92	65.76
TraesCS4A01G105600.1	Wheat	nucleus	67.68	65.53
HORVU4Hr1G057310.1	Barley	nucleus, plastid	67.45	60.63
CDY43366	Canola	cytosol	28.34	33.43
CDY24207	Canola	cytosol	27.87	32.87
CDY25553	Canola	cytosol, nucleus, peroxisome	27.4	30.79
CDY34392	Canola	cytosol, nucleus, peroxisome	27.17	30.53

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	GO:A0A078FAH7	UniProt:A0A078FAH7	EnsemblPlants:CDY10421
ProteinID:CDY10421	ProteinID:CDY10421.1	GO:GO:0000166	GO:GO:0000287	GO:GO:0000737	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003916	GO:GO:0003918	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009330	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016853	GO:GO:0046872
GO:GO:0061505	EnsemblPlantsGene:GSBRNA2T00032339001	InterPro:IPR036388	HAMAP:MF_00132	PFAM:PF04406	PRINTS:PR01550
PRINTS:PR01552	PANTHER:PTHR10848	PANTHER:PTHR10848:SF0	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N
InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	InterPro:TopoVI_A	UniParc:UPI0004EBFEB6	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

BnaCnng03220DDNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A078FAH7]

Coordinates

chrLK032003:-:390978..392463

Molecular Weight (calculated)

47475.6 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.142

Length

427 amino acids

Sequence
(BLAST)

001: MADKKKRKRA KDSQEEDLPF KSILESDEAI LKLLKSYIST SLTAAGSSGA SSSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YIRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.