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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 2
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER95053
EER96475

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02820.1 EER96475 AT3G20780.1 11410368
AT5G02820.1 EER96475 AT3G20780.1 16339310
AT5G02820.1 EER95053 AT5G02820.1 16339310
AT5G02820.1 EER95053 AT5G02820.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d028705_P001 Maize plastid 97.48 97.48
Os03t0284800-01 Rice nucleus 92.89 91.63
TraesCS4D01G199200.1 Wheat nucleus, plastid 89.45 88.44
TraesCS4A01G105600.1 Wheat nucleus 89.45 88.44
TraesCS4B01G198400.1 Wheat nucleus, plastid 89.45 88.44
HORVU4Hr1G057310.1 Barley nucleus, plastid 88.53 81.26
KRH19789 Soybean nucleus 67.66 70.74
PGSC0003DMT400071721 Potato nucleus 67.89 70.64
KRH32381 Soybean nucleus 67.66 70.41
VIT_08s0040g03250.t01 Wine grape nucleus 67.2 69.76
CDY10421 Canola nucleus 67.2 68.62
AT5G02820.1 Thale cress nucleus 66.97 68.38
CDX70343 Canola nucleus 66.97 68.38
Bra009564.1-P Field mustard nucleus 67.2 68.3
Solyc09g007210.2.1 Tomato nucleus 38.53 62.69
KXG24464 Sorghum cytoskeleton, cytosol, nucleus, plastid 28.67 32.72
EER93438 Sorghum nucleus 25.92 29.5
Protein Annotations
Gene3D:1.10.10.10Gene3D:3.40.1360.10MapMan:35.1EntrezGene:8084884UniProt:C5WNM1EnsemblPlants:EER95053
ProteinID:EER95053ProteinID:EER95053.1GO:GO:0000003GO:GO:0000166GO:GO:0000228GO:GO:0000287
GO:GO:0000706GO:GO:0000737GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824
GO:GO:0003916GO:GO:0003918GO:GO:0004518GO:GO:0005488GO:GO:0005515GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005694GO:GO:0006139
GO:GO:0006259GO:GO:0006265GO:GO:0006950GO:GO:0007049GO:GO:0007131GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009330GO:GO:0009957GO:GO:0009987GO:GO:0016043
GO:GO:0016787GO:GO:0016853GO:GO:0016889GO:GO:0030154GO:GO:0042138GO:GO:0042802
GO:GO:0046872GO:GO:0061505InterPro:IPR036388HAMAP:MF_00132PFAM:PF04406PRINTS:PR01550
PRINTS:PR01552PANTHER:PTHR10848PANTHER:PTHR10848:SF0EnsemblPlantsGene:SORBI_3001G410800SUPFAM:SSF56726unigene:Sbi.18520
InterPro:Spo11/TopoVI_AInterPro:Spo11/TopoVI_A_NInterPro:Spo11/TopoVI_A_sfInterPro:TOPRIM_Topo6A/Spo11InterPro:TopoVI_AUniParc:UPI0001A8304F
InterPro:WH-like_DNA-bd_sfRefSeq:XP_002468055.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr1:-:69404787..69409011
Molecular Weight (calculated)
47758.6 Da
IEP (calculated)
9.620
GRAVY (calculated)
-0.085
Length
436 amino acids
Sequence
(BLAST)
001: MSEKKRRAGA SAVGAASSSK KPRASAAASY AESLRSKLRP DASILATLRS LASASASKSK ATSKSLADLD LSADPASSYI VVADQDSASV TSRINRLVLA
101: AARSILSGRG FSFAVPSRAA SNQVYLPDLD RIVLVRRESA RPFANVATAR KATITARVLS LVHAVLGRGI HVTKRDLFYT DVKLFGDQSQ SDAVLDDVSC
201: MLGCTRSSLH VVASEKGVVV GRLVFADDGD RIDCTRMGVG GKAIPPNVDR VSGIESDALF ILLVEKDAAF MRLAEDRFYN RFPCIILTAK GQPDVATRLF
301: LRRLKVELKL PVLALVDSDP YGLKILSVYM CGSKNMSYDS ANLTTPDIKW LGVRPSDLDK YRVPEQCRLP MTDHDIKVGK ELLEEDFVKQ NEGWVKELEM
401: MLRTKQKAEI QALSSFGFQY LTEVYLPLKL QEQDWI
Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)
001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL
Arabidopsis Description
TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.