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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
 nucleus: 19621931
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0284800-01
Os09t0279600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02820.1 Os09t0279600-01 AT3G20780.1 11410368
AT5G02820.1 Os09t0279600-01 AT3G20780.1 16339310
AT5G02820.1 Os03t0284800-01 AT5G02820.1 16339310
AT5G02820.1 Os03t0284800-01 AT5G02820.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER95053 Sorghum plastid 91.63 92.89
Zm00001d028705_P001 Maize plastid 91.4 92.66
TraesCS4A01G105600.1 Wheat nucleus 90.05 90.25
TraesCS4D01G199200.1 Wheat nucleus, plastid 89.82 90.02
TraesCS4B01G198400.1 Wheat nucleus, plastid 89.82 90.02
HORVU4Hr1G057310.1 Barley nucleus, plastid 88.91 82.74
KRH19789 Soybean nucleus 67.42 71.46
KRH32381 Soybean nucleus 67.65 71.36
VIT_08s0040g03250.t01 Wine grape nucleus 66.29 69.76
PGSC0003DMT400071721 Potato nucleus 66.06 69.69
AT5G02820.1 Thale cress nucleus 66.74 69.09
CDY10421 Canola nucleus 66.29 68.62
CDX70343 Canola nucleus 66.06 68.38
Bra009564.1-P Field mustard nucleus 66.29 68.3
Solyc09g007210.2.1 Tomato nucleus 37.33 61.57
Os03t0752200-01 Rice nucleus 27.83 32.28
Os08t0156900-01 Rice cytosol 28.05 32.21
Os12t0622500-01 Rice nucleus 25.34 23.0
Protein Annotations
Gene3D:1.10.10.10Gene3D:3.40.1360.10MapMan:35.1EntrezGene:4332470ProteinID:AAO17008.1EMBL:AB219539
ProteinID:ABF95345.1ProteinID:BAF11679.2ProteinID:BAS83614.1GO:GO:0000003GO:GO:0000166GO:GO:0000228
GO:GO:0000287GO:GO:0000706GO:GO:0000737GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003824GO:GO:0003916GO:GO:0003918GO:GO:0004518GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005694
GO:GO:0006139GO:GO:0006259GO:GO:0006265GO:GO:0006950GO:GO:0007049GO:GO:0007131
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009330GO:GO:0009957GO:GO:0009987
GO:GO:0016043GO:GO:0016787GO:GO:0016853GO:GO:0016889GO:GO:0030154GO:GO:0042138
GO:GO:0042802GO:GO:0046872GO:GO:0061505InterPro:IPR036388HAMAP:MF_00132EnsemblPlantsGene:Os03g0284800
EnsemblPlants:Os03t0284800-01PFAM:PF04406PRINTS:PR01550PRINTS:PR01552PANTHER:PTHR10848PANTHER:PTHR10848:SF0
UniProt:Q0DSV9SUPFAM:SSF56726InterPro:Spo11/TopoVI_AInterPro:Spo11/TopoVI_A_NInterPro:Spo11/TopoVI_A_sfInterPro:TOPRIM_Topo6A/Spo11
InterPro:TopoVI_AUniParc:UPI0001574517InterPro:WH-like_DNA-bd_sfRefSeq:XP_015631482.1SEG:seg:
Description
TOPOISOMERASE 6 SUBUNIT A3Spo11/DNA topoisomerase VI, subunit A family protein. (Os03t0284800-01)
Coordinates
chr3:+:9797238..9799120
Molecular Weight (calculated)
48245.1 Da
IEP (calculated)
9.729
GRAVY (calculated)
-0.127
Length
442 amino acids
Sequence
(BLAST)
001: MSEKKRRGGA GAGAASGSAS KKPRVSTAAS YAESLRSKLR PDASILATLR SLASACSKSK PAGSSSSSSS ASKALAAEDD PAASYIVVAD QDSASVTSRI
101: NRLVLAAARS ILSGRGFSFA VPSRAASNQV YLPDLDRIVL VRRESARPFA NVATARKATI TARVLSLVHA VLRRGIHVTK RDLFYTDVKL FGDQAQSDAV
201: LDDVSCMLGC TRSSLHVVAS EKGVVVGRLT FADDGDRIDC TRMGVGGKAI PPNIDRVSGI ESDALFILLV EKDAAFMRLA EDRFYNRFPC IILTAKGQPD
301: VATRLFLRRL KVELKLPVLA LVDSDPYGLK ILSVYMCGSK NMSYDSANLT TPDIKWLGVR PSDLDKYRVP EQCRLPMTDH DIKVGKELLE EDFVKQNEGW
401: VKELETMLRT RQKAEIQALS SFGFQYLTEV YLPLKLQQQD WI
Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)
001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL
Arabidopsis Description
TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.