Factsheet for HORVU4Hr1G057310.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G057310.1
HORVU5Hr1G053310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	HORVU5Hr1G053310.1	AT3G20780.1	11410368
AT5G02820.1	HORVU5Hr1G053310.1	AT3G20780.1	16339310
AT5G02820.1	HORVU4Hr1G057310.1	AT5G02820.1	16339310
AT5G02820.1	HORVU4Hr1G057310.1	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G105600.1	Wheat	nucleus	91.58	98.64
TraesCS4B01G198400.1	Wheat	nucleus, plastid	91.37	98.41
TraesCS4D01G199200.1	Wheat	nucleus, plastid	91.16	98.19
Zm00001d028705_P001	Maize	plastid	81.68	88.99
Os03t0284800-01	Rice	nucleus	82.74	88.91
EER95053	Sorghum	plastid	81.26	88.53
KRH19789	Soybean	nucleus	60.42	68.82
KRH32381	Soybean	nucleus	60.63	68.74
VIT_08s0040g03250.t01	Wine grape	nucleus	60.63	68.57
PGSC0003DMT400071721	Potato	nucleus	60.21	68.26
AT5G02820.1	Thale cress	nucleus	60.63	67.45
CDY10421	Canola	nucleus	60.63	67.45
CDX70343	Canola	nucleus	60.0	66.74
Bra009564.1-P	Field mustard	nucleus	60.21	66.67
Solyc09g007210.2.1	Tomato	nucleus	33.47	59.33
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	26.11	30.54

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	UniProt:A0A287P6H4	GO:GO:0000166	GO:GO:0000287
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003916
GO:GO:0003918	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009330	GO:GO:0009957	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016853	GO:GO:0030154	GO:GO:0042802	GO:GO:0046872
GO:GO:0061505	EnsemblPlantsGene:HORVU4Hr1G057310	EnsemblPlants:HORVU4Hr1G057310.1	InterPro:IPR036388	HAMAP:MF_00132	PFAM:PF04406
PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848	PANTHER:PTHR10848:SF0	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A
InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	InterPro:TopoVI_A	UniParc:UPI000B463B5E	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

DNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A287P6H4]

Coordinates

chrchr4H:+:481893942..481895472

Molecular Weight (calculated)

51971.5 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.197

Length

475 amino acids

Sequence
(BLAST)

001: PNQSHSHTRV RILPPSPPVR RSVPPGEPAS GSLQMSERKR RAGTDAAEGG STSKKLRGAS AAASYAQSLR SKLRPDASIL ASLRALASAA SKSKPATASS
101: AGAKALSEDD PASASSNYIV VADQDTTSVT SRINRLVLSV ARSILAGRGF SFAVPSRTSS NQVYLPDLDR IVLLRRESAR PFANVATARK ATVTARVLSL
201: VHAVLRRGIH VTKRDLFYTD VKLFGDQSQS DAILDDVSCM LGCTRSSLHV VASEKGVVVG RLTFADDGDV IDCTRMGVGG KAIPPNIDRV SGIESDALFI
301: LLVEKDAAFM RLAEDRFYNR FPCIILTAKG QPDVATRLFL RRLKVELKLP VLALVDSDPY GLKILSVYMC GSKNMSYDSA NLTTPDIKWL GVRPSDLDKY
401: RVPEQCRLPM SDHDIKVGKE MLEEDFVKQN EGWVKELETM LRTKQKAEIQ ALSSFGFQYL TEVYLPLKLQ QEDWI

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.