Factsheet for HORVU7Hr1G071060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G053310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	HORVU5Hr1G053310.1	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G296000.2	Wheat	nucleus	92.36	97.15
TraesCS7B01G201200.1	Wheat	cytosol	91.87	96.63
TraesCS7A01G300300.1	Wheat	nucleus	83.25	94.15
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	83.25	88.48
Os08t0156900-01	Rice	cytosol	80.54	84.94
Zm00001d049550_P001	Maize	cytosol	69.95	79.33
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	62.07	66.14
KRH27888	Soybean	nucleus, plasma membrane, plastid	60.34	64.14
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	59.85	63.95
CDY34392	Canola	cytosol, nucleus, peroxisome	59.85	63.95
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	59.85	63.45
CDY25553	Canola	cytosol, nucleus, peroxisome	59.11	63.16
Solyc08g081590.1.1	Tomato	nucleus	38.18	61.75
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	25.62	48.6
GSMUA_AchrUn_...	Banana	plasma membrane	67.24	45.96
HORVU4Hr1G057310.1	Barley	nucleus, plastid	30.54	26.11

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	UniProt:A0A287WTJ5	GO:GO:0000003	GO:GO:0000166
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009553	GO:GO:0009555	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0048316
GO:GO:0051026	GO:GO:0051321	EnsemblPlantsGene:HORVU7Hr1G071060	EnsemblPlants:HORVU7Hr1G071060.1	InterPro:IPR036388	InterPro:Meiotic_Spo11
PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF1	SUPFAM:SSF56726
InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI000B469F92	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:387994236..387998247

Molecular Weight (calculated)

45109.7 Da

IEP (calculated)

7.824

GRAVY (calculated)

0.036

Length

406 amino acids

Sequence
(BLAST)

001: PAAISSSDVG SAARMAMAEA EAEAEAEVPA ASLFGADCRL CSADVLSPPE VRARIEVAVL NFLALLSSPS SPSISVLPLI SRKSTNCSLR SGLLSDVSSV
101: YLSYAFCKRS LMRENDAKAF VRVWKVMEMC YKILGEGKLV TQRELFYKLL SDSPKYFSCQ RHVNQTIQDV VSLLRCTRQS LGIMASSRGA LIGRLVLHEP
201: EEEHIDCSIL GPSGHAITGD LNQLSRLNLS SDARYLILVE KDAIFQRLAE DRLYNQLPCI LITAKGYPDI ATRFILHRLS QTFPNMPIFA LVDWNPAGLS
301: ILCTYKYGSI SMGLESYRYA CNVKWLGLRG DDLQLIPQSS FQELKPRDLQ VAKSLLSSKF LQDTHRAELT RMVETGTRAE IEALYCHGFD FLGKFIARKI
401: VQGDYI

Best Arabidopsis Sequence Match ( AT1G63990.1 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.