Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra035745.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63990.1 | Bra035745.1-P | AT3G20780.1 | 11410368 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34392 | Canola | cytosol, nucleus, peroxisome | 98.42 | 98.42 |
| CDY25553 | Canola | cytosol, nucleus, peroxisome | 97.37 | 97.37 |
| AT1G63990.1 | Thale cress | cytosol, nucleus, peroxisome | 92.63 | 91.91 |
| KRH27888 | Soybean | nucleus, plasma membrane, plastid | 73.16 | 72.77 |
| VIT_02s0025g00410.t01 | Wine grape | nucleus, peroxisome, plastid | 72.89 | 72.7 |
| Solyc08g081590.1.1 | Tomato | nucleus | 43.42 | 65.74 |
| KXG24464 | Sorghum | cytoskeleton, cytosol, nucleus, plastid | 63.68 | 63.35 |
| TraesCS7D01G296000.2 | Wheat | nucleus | 63.68 | 62.69 |
| Os08t0156900-01 | Rice | cytosol | 63.42 | 62.6 |
| TraesCS7B01G201200.1 | Wheat | cytosol | 63.42 | 62.44 |
| TraesCS7A01G300300.1 | Wheat | nucleus | 58.68 | 62.12 |
| HORVU7Hr1G071060.1 | Barley | cytosol, nucleus | 63.95 | 59.85 |
| Zm00001d049550_P001 | Maize | cytosol | 54.47 | 57.82 |
| PGSC0003DMT400031764 | Potato | cytosol, nucleus, plastid | 31.05 | 55.14 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 63.16 | 40.4 |
| Bra009564.1-P | Field mustard | nucleus | 30.53 | 27.04 |
| Bra039374.1-P | Field mustard | cytosol | 25.0 | 26.24 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:13.3.6.2.1.1 | Gene3D:3.40.1360.10 | EnsemblPlantsGene:Bra027674 | EnsemblPlants:Bra027674.1 | EnsemblPlants:Bra027674.1-P |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000737 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0048316 | GO:GO:0051026 | GO:GO:0051321 | InterPro:IPR036388 | UniProt:M4EFW1 |
| InterPro:Meiotic_Spo11 | PFAM:PF04406 | PRINTS:PR01550 | PRINTS:PR01551 | PANTHER:PTHR10848 | PANTHER:PTHR10848:SF1 |
| SUPFAM:SSF56726 | InterPro:Spo11/TopoVI_A | InterPro:Spo11/TopoVI_A_N | InterPro:Spo11/TopoVI_A_sf | InterPro:TOPRIM_Topo6A/Spo11 | UniParc:UPI0002542391 |
| InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
AT1G63990 (E=5e-187) SPO11-2 | SPO11-2 (SPORULATION 11-2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic
Coordinates
chrA09:+:6991565..6993474
Molecular Weight (calculated)
42791.1 Da
IEP (calculated)
8.134
GRAVY (calculated)
0.037
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDASMKFF SDQNTSYADI LPPHEARARI EVSVLNLLRV LNSPDPAISD LSLINRKRSN SYINQGILTD VSYIFLSTSF TKSSLTNAKT AKAFVRVWKV
101: MEMCFQILLQ EKRVTQRELF YKLLCDSPDL FSSQIEVNRS VQDVVALLRC SRFSLGIMAS TRGLVAGRLS LQEPGKEPVD CSACGSSGFP ISGDLNLLDN
201: TIMTSDARYI ILVEKHAIFH RLVEDRVFNH IPCVFITAKG YPDIATRFFL HRMSITFPHL PILALVDWNP AGLAILCTFK FGSIGMGLEA YRYACNVKWI
301: GLRGDDLNLI PEESLVPLKA KDSQIAKSLL SSKILQENYR EELSLMIETG KRAEIEALYC HGYNYLGKYI ATKIVQGKYI
101: MEMCFQILLQ EKRVTQRELF YKLLCDSPDL FSSQIEVNRS VQDVVALLRC SRFSLGIMAS TRGLVAGRLS LQEPGKEPVD CSACGSSGFP ISGDLNLLDN
201: TIMTSDARYI ILVEKHAIFH RLVEDRVFNH IPCVFITAKG YPDIATRFFL HRMSITFPHL PILALVDWNP AGLAILCTFK FGSIGMGLEA YRYACNVKWI
301: GLRGDDLNLI PEESLVPLKA KDSQIAKSLL SSKILQENYR EELSLMIETG KRAEIEALYC HGYNYLGKYI ATKIVQGKYI
001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI
Arabidopsis Description
SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.