Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g01530.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63990.1 | VIT_06s0004g01530.t01 | AT3G20780.1 | 11410368 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27888 | Soybean | nucleus, plasma membrane, plastid | 76.64 | 76.44 |
| Solyc08g081590.1.1 | Tomato | nucleus | 49.61 | 75.3 |
| AT1G63990.1 | Thale cress | cytosol, nucleus, peroxisome | 74.28 | 73.89 |
| CDY34392 | Canola | cytosol, nucleus, peroxisome | 72.97 | 73.16 |
| Bra027674.1-P | Field mustard | cytosol, nucleus, peroxisome | 72.7 | 72.89 |
| CDY25553 | Canola | cytosol, nucleus, peroxisome | 72.18 | 72.37 |
| TraesCS7D01G296000.2 | Wheat | nucleus | 66.4 | 65.54 |
| TraesCS7B01G201200.1 | Wheat | cytosol | 66.4 | 65.54 |
| KXG24464 | Sorghum | cytoskeleton, cytosol, nucleus, plastid | 65.62 | 65.44 |
| TraesCS7A01G300300.1 | Wheat | nucleus | 60.37 | 64.07 |
| Os08t0156900-01 | Rice | cytosol | 64.57 | 63.9 |
| HORVU7Hr1G071060.1 | Barley | cytosol, nucleus | 66.14 | 62.07 |
| PGSC0003DMT400031764 | Potato | cytosol, nucleus, plastid | 34.12 | 60.75 |
| Zm00001d049550_P001 | Maize | cytosol | 55.64 | 59.22 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 66.93 | 42.93 |
| VIT_19s0015g00280.t01 | Wine grape | cytosol | 25.98 | 27.42 |
| VIT_08s0040g03250.t01 | Wine grape | nucleus | 29.13 | 26.43 |
Protein Annotations
| MapMan:13.3.6.2.1.1 | Gene3D:3.40.1360.10 | ProteinID:CBI34392 | ProteinID:CBI34392.3 | UniProt:D7TV67 | EMBL:FN596251 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000228 | GO:GO:0000706 | GO:GO:0000737 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003918 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016889 | GO:GO:0042138 | GO:GO:0048316 |
| GO:GO:0051026 | GO:GO:0051321 | InterPro:Meiotic_Spo11 | PFAM:PF04406 | PRINTS:PR01550 | PRINTS:PR01551 |
| PANTHER:PTHR10848 | PANTHER:PTHR10848:SF1 | SUPFAM:SSF56726 | InterPro:Spo11/TopoVI_A | InterPro:Spo11/TopoVI_A_N | InterPro:Spo11/TopoVI_A_sf |
| InterPro:TOPRIM_Topo6A/Spo11 | UniParc:UPI0001BE44AD | ArrayExpress:VIT_02s0025g00410 | EnsemblPlantsGene:VIT_02s0025g00410 | EnsemblPlants:VIT_02s0025g00410.t01 | : |
Description
No Description!
Coordinates
chr2:-:505013..508954
Molecular Weight (calculated)
43077.8 Da
IEP (calculated)
9.119
GRAVY (calculated)
0.102
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLCRSSTF FSDQNLCNAD IIGSSEARAR IEVAVLNFLK ILNSPSPAIS DLPLISRRWS NSRVNRGLLT EVSCIFLSHS FCTRSLMRPN AAKAFVRVWK
101: VVEMCFQILV QEKRVTQREL FYKLLCSSPQ YFTCQLQVNR TIQDVVALLR CSRYSLGIMA SSRGAVTGRL LLQAFISETV DCSACGSSGH AISGDMNLLE
201: RMVMKTDARY IIVVEKHAIF QRLAEDRVFN QIPSILITAK GYPDIATRFL LYRMSRAFPD LPILALVDWN PAGLAILCTF KFGSIGMGLE AYRYACNVKW
301: LGLRGDDLQL IPEESLIPLK PRDLQIAKSL KSSEILEENY RNELEVMVQS GRRAEIEALY FRGYNFLGKY IAKKIVQANY V
101: VVEMCFQILV QEKRVTQREL FYKLLCSSPQ YFTCQLQVNR TIQDVVALLR CSRYSLGIMA SSRGAVTGRL LLQAFISETV DCSACGSSGH AISGDMNLLE
201: RMVMKTDARY IIVVEKHAIF QRLAEDRVFN QIPSILITAK GYPDIATRFL LYRMSRAFPD LPILALVDWN PAGLAILCTF KFGSIGMGLE AYRYACNVKW
301: LGLRGDDLQL IPEESLIPLK PRDLQIAKSL KSSEILEENY RNELEVMVQS GRRAEIEALY FRGYNFLGKY IAKKIVQANY V
001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI
Arabidopsis Description
SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.