Factsheet for VIT_08s0040g03250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g01530.t01
VIT_08s0040g03250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	VIT_06s0004g01530.t01	AT3G20780.1	11410368
AT5G02820.1	VIT_06s0004g01530.t01	AT3G20780.1	16339310
AT5G02820.1	VIT_08s0040g03250.t01	AT5G02820.1	16339310
AT5G02820.1	VIT_08s0040g03250.t01	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19789	Soybean	nucleus	87.14	87.77
KRH32381	Soybean	nucleus	87.14	87.35
PGSC0003DMT400071721	Potato	nucleus	84.05	84.25
CDX70343	Canola	nucleus	85.48	84.07
CDY10421	Canola	nucleus	85.48	84.07
Bra009564.1-P	Field mustard	nucleus	85.71	83.92
AT5G02820.1	Thale cress	nucleus	84.76	83.37
Solyc09g007210.2.1	Tomato	nucleus	49.52	77.61
Zm00001d028705_P001	Maize	plastid	70.0	67.43
EER95053	Sorghum	plastid	69.76	67.2
Os03t0284800-01	Rice	nucleus	69.76	66.29
TraesCS4B01G198400.1	Wheat	nucleus, plastid	69.05	65.76
TraesCS4D01G199200.1	Wheat	nucleus, plastid	69.05	65.76
TraesCS4A01G105600.1	Wheat	nucleus	68.81	65.53
HORVU4Hr1G057310.1	Barley	nucleus, plastid	68.57	60.63
VIT_19s0015g00280.t01	Wine grape	cytosol	28.33	32.96
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	26.43	29.13

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100260201	wikigene:100260201	Gene3D:3.40.1360.10	MapMan:35.1	ProteinID:CCB56999
ProteinID:CCB56999.1	UniProt:F6HQV1	EMBL:FN596008	GO:GO:0000003	GO:GO:0000166	GO:GO:0000228
GO:GO:0000287	GO:GO:0000706	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003916	GO:GO:0003918	GO:GO:0004518	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009330	GO:GO:0009957	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016853	GO:GO:0016889	GO:GO:0030154	GO:GO:0042138
GO:GO:0042802	GO:GO:0046872	GO:GO:0061505	InterPro:IPR036388	EntrezGene:LOC100260201	wikigene:LOC100260201
HAMAP:MF_00132	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848	PANTHER:PTHR10848:SF0
SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	TIGR:TC52931	InterPro:TOPRIM_Topo6A/Spo11
InterPro:TopoVI_A	UniParc:UPI0001983C40	ArrayExpress:VIT_08s0040g03250	EnsemblPlantsGene:VIT_08s0040g03250	EnsemblPlants:VIT_08s0040g03250.t01	unigene:Vvi.4087
InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002274790	RefSeq:XP_002274790.1	:	:	:

Description

DNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:F6HQV1]

Coordinates

chr8:-:14198220..14199816

Molecular Weight (calculated)

46901.6 Da

IEP (calculated)

7.651

GRAVY (calculated)

-0.222

Length

420 amino acids

Sequence
(BLAST)

001: MADKKKRRRT DPSDSDQQHL PFRNSLKSDE IILQTLKDLC SSSSSDGATG TLTLSDLGLA STCREVADLS LSSVQSTIET LILRLTHSIL SGQGFSFSVP
101: SRSSANQLYV PELDRIVLKD KSSLRPFANV STVRKSAVTT RILQLIHQLC TKNIHVTKRD LFYTDVKLFQ DQTQSDSVLD DVSCMLGCTR SSLNVIASEK
201: GVVVGRLIFS DNGDMIDCTK MGMGGKAIPP NIDRVGDMQS DALFILLVEK DAAYIRLAED RFYNRFPCII VTAKGQPDVA TRLFLRKMKT ELKLPVLALV
301: DSDPYGLKIL SVYGCGSKNM SYDSANLTTP DIKWLGIRPS DLDKYSIPEQ CRLPMTEQDI KTGKDLLEED FVKKNPGWVE ELNLMVKTKQ KAEIQALSSF
401: GFQYLSEVYL PLKLQQQDWL

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.