Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70343 | Canola | nucleus | 95.78 | 95.78 |
| CDY10421 | Canola | nucleus | 95.78 | 95.78 |
| Bra009564.1-P | Field mustard | nucleus | 96.02 | 95.57 |
| KRH32381 | Soybean | nucleus | 83.37 | 84.96 |
| VIT_08s0040g03250.t01 | Wine grape | nucleus | 83.37 | 84.76 |
| KRH19789 | Soybean | nucleus | 82.67 | 84.65 |
| PGSC0003DMT400071721 | Potato | nucleus | 81.26 | 82.82 |
| Solyc09g007210.2.1 | Tomato | nucleus | 47.31 | 75.37 |
| EER95053 | Sorghum | plastid | 68.38 | 66.97 |
| Os03t0284800-01 | Rice | nucleus | 69.09 | 66.74 |
| Zm00001d028705_P001 | Maize | plastid | 67.92 | 66.51 |
| TraesCS4B01G198400.1 | Wheat | nucleus, plastid | 68.62 | 66.44 |
| TraesCS4D01G199200.1 | Wheat | nucleus, plastid | 68.62 | 66.44 |
| TraesCS4A01G105600.1 | Wheat | nucleus | 68.38 | 66.21 |
| HORVU4Hr1G057310.1 | Barley | nucleus, plastid | 67.45 | 60.63 |
| AT3G13170.1 | Thale cress | cytosol | 27.63 | 32.6 |
| AT1G63990.1 | Thale cress | cytosol, nucleus, peroxisome | 26.23 | 29.24 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.40.1360.10 | MapMan:35.1 | EntrezGene:831314 | UniProt:A0A178UQD3 | ProteinID:AED90522.1 |
| EMBL:AF323679 | EMBL:AJ297842 | ArrayExpress:AT5G02820 | EnsemblPlantsGene:AT5G02820 | RefSeq:AT5G02820 | TAIR:AT5G02820 |
| RefSeq:AT5G02820-TAIR-G | EnsemblPlants:AT5G02820.1 | TAIR:AT5G02820.1 | Unigene:At.33359 | EMBL:BT028966 | ProteinID:CAB86036.1 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000228 | GO:GO:0000287 | GO:GO:0000706 | GO:GO:0000737 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003916 | GO:GO:0003918 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006265 |
| GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009330 | GO:GO:0009957 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016853 |
| GO:GO:0016889 | GO:GO:0030154 | GO:GO:0042138 | GO:GO:0042802 | GO:GO:0046872 | GO:GO:0061505 |
| InterPro:IPR036388 | HAMAP:MF_00132 | RefSeq:NP_195902.1 | ProteinID:OAO95324.1 | PFAM:PF04406 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR01550 | PRINTS:PR01552 |
| PANTHER:PTHR10848 | PANTHER:PTHR10848:SF0 | UniProt:Q9LZ03 | Symbol:RHL2 | SUPFAM:SSF56726 | InterPro:Spo11/TopoVI_A |
| InterPro:Spo11/TopoVI_A_N | InterPro:Spo11/TopoVI_A_sf | InterPro:TOPRIM_Topo6A/Spo11 | InterPro:TopoVI_A | UniParc:UPI000009CF01 | InterPro:WH-like_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
Coordinates
chr5:+:642554..644394
Molecular Weight (calculated)
47448.5 Da
IEP (calculated)
7.155
GRAVY (calculated)
-0.145
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.