Factsheet for Zm00001d028705_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019950_P001
Zm00001d028705_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	Zm00001d019950_P001	AT3G20780.1	11410368
AT5G02820.1	Zm00001d019950_P001	AT3G20780.1	16339310
AT5G02820.1	Zm00001d028705_P001	AT5G02820.1	16339310
AT5G02820.1	Zm00001d028705_P001	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95053	Sorghum	plastid	97.48	97.48
Os03t0284800-01	Rice	nucleus	92.66	91.4
TraesCS4A01G105600.1	Wheat	nucleus	89.91	88.89
TraesCS4B01G198400.1	Wheat	nucleus, plastid	89.91	88.89
TraesCS4D01G199200.1	Wheat	nucleus, plastid	89.91	88.89
HORVU4Hr1G057310.1	Barley	nucleus, plastid	88.99	81.68
KRH19789	Soybean	nucleus	67.2	70.26
PGSC0003DMT400071721	Potato	nucleus	67.43	70.17
VIT_08s0040g03250.t01	Wine grape	nucleus	67.43	70.0
KRH32381	Soybean	nucleus	67.2	69.93
CDY10421	Canola	nucleus	66.74	68.15
AT5G02820.1	Thale cress	nucleus	66.51	67.92
CDX70343	Canola	nucleus	66.51	67.92
Bra009564.1-P	Field mustard	nucleus	66.74	67.83
Solyc09g007210.2.1	Tomato	nucleus	38.07	61.94
Zm00001d049550_P001	Maize	cytosol	22.48	27.37

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100273699	Gene3D:3.40.1360.10	MapMan:35.1	UniProt:B4FX18	EMBL:BT041656
GO:GO:0000166	GO:GO:0000287	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003916	GO:GO:0003918	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009330
GO:GO:0009957	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016853	GO:GO:0030154
GO:GO:0042802	GO:GO:0046872	GO:GO:0061505	InterPro:IPR036388	HAMAP:MF_00132	ProteinID:ONL96809.1
PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848	PANTHER:PTHR10848:SF0	SUPFAM:SSF56726
InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	InterPro:TopoVI_A	UniParc:UPI00017B7559
InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d028705	EnsemblPlants:Zm00001d028705_P001	EnsemblPlants:Zm00001d028705_T001	SEG:seg	:

Description

topoisomerase-like enzyme3 topoisomerase-like enzyme3

Coordinates

chr1:+:43725600..43726910

Molecular Weight (calculated)

47766.5 Da

IEP (calculated)

9.526

GRAVY (calculated)

-0.118

Length

436 amino acids

Sequence
(BLAST)

001: MSEKKRRAGA SAAGAASSSK KPRASSAASY AESLRSKLRP DASILATLRS LASASASKSK AAARSLADHD PCADPASSYI VVADQDSTSV TSRINRLVLA
101: AARSILSGRG FSFAVPSRAA SNQVYLPDLD RIVLVRRESA RPFANVATAR KATITARVLS LVHAVLGRGI HVTKRDLFYT DVKLFGDQTQ SDAVLDDVSC
201: MLGCTRSSLH VVASEKGVVV GRLVFADDGD RIDCTRMGVG GKAIPPNVDR VSGIESDALF ILLVEKDAAF MRLAEDRFYN RFPCIILTAK GQPDVATRLF
301: LRRLKVELKL PVLALVDSDP YGLKILSVYM CGSKNMSYDS ANLTTPDIKW LGVRPSDLDK YRVPEQCRLP MTDHDIKVGK ELLEEDFVKQ NEGWVKELET
401: MLRTKQKAEI QALSSFGFQY LTEVYLPLKL QEQDWI

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.