Factsheet for Zm00001d049550_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019950_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	Zm00001d019950_P001	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	88.27	82.72
TraesCS7B01G201200.1	Wheat	cytosol	79.33	73.58
TraesCS7D01G296000.2	Wheat	nucleus	79.33	73.58
Os08t0156900-01	Rice	cytosol	76.82	71.43
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	79.33	69.95
TraesCS7A01G300300.1	Wheat	nucleus	70.11	69.92
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	59.22	55.64
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	58.94	55.09
CDY34392	Canola	cytosol, nucleus, peroxisome	58.1	54.74
KRH27888	Soybean	nucleus, plasma membrane, plastid	58.38	54.71
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	57.82	54.47
CDY25553	Canola	cytosol, nucleus, peroxisome	57.54	54.21
Solyc08g081590.1.1	Tomato	nucleus	37.15	52.99
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	27.93	46.73
GSMUA_AchrUn_...	Banana	plasma membrane	62.57	37.71
Zm00001d028705_P001	Maize	plastid	27.37	22.48

Protein Annotations

Gene3D:3.40.1360.10	MapMan:35.1	UniProt:A0A1D6PW06	ProteinID:AQK50754.1	GO:GO:0000003	GO:GO:0000166
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009553	GO:GO:0009555	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016853
GO:GO:0048316	GO:GO:0051026	GO:GO:0051321	PFAM:PF04406	PANTHER:PTHR10848	PANTHER:PTHR10848:SF1
SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	UniParc:UPI0008427358	EnsemblPlantsGene:Zm00001d049550
EnsemblPlants:Zm00001d049550_P001	EnsemblPlants:Zm00001d049550_T001	SEG:seg	:	:	:

Description

topoisomerase-like enzyme2 topoisomerase-like enzyme2

Coordinates

chr4:+:34374982..34377834

Molecular Weight (calculated)

39376.9 Da

IEP (calculated)

8.601

GRAVY (calculated)

0.122

Length

358 amino acids

Sequence
(BLAST)

001: MAEANVAAAS LFGADGRLCS ADILAPPEVR ARIEVAVLNF LAALASPSSP AISVLPLISR SSANCSLRSG LLNDVSSVYL SYTFCKRSLT HNPKAFVRVW
101: KVMEMCYKIL GEGKLVQQRE LFYKLLSDSP KYFSCQRHVN QAIQDVVSLL RCTRQSLGVM ASSRGALIGR LVLHEPDGEQ IDCSILGASG HAITGDLNLL
201: SKLNLSSGSR YIIVVEKVHL ASTEPDISEY ADFRISGLIA LIFFSRNPAG LAILCTYKYG SISMGLESYR YACNVKWLGV RGGDLHLIPE DAFQELKPRD
301: LQIAKSLMSS KFLQESHRAE LALMVERGKR ADIEALYSHG FDFLGKYIAR KIVQGDYI

Best Arabidopsis Sequence Match ( AT1G63990.1 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.