CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
plastid 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus, plastid
Any Predictor:	cytoskeleton, cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	EER96475	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049550_P001	Maize	cytosol	82.72	88.27
TraesCS7D01G296000.2	Wheat	nucleus	88.48	87.56
TraesCS7B01G201200.1	Wheat	cytosol	88.48	87.56
TraesCS7A01G300300.1	Wheat	nucleus	79.58	84.68
Os08t0156900-01	Rice	cytosol	84.29	83.64
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	88.48	83.25
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	65.44	65.62
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	64.14	63.97
CDY34392	Canola	cytosol, nucleus, peroxisome	63.61	63.95
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	63.35	63.68
CDY25553	Canola	cytosol, nucleus, peroxisome	62.83	63.16
KRH27888	Soybean	nucleus, plasma membrane, plastid	63.09	63.09
Solyc08g081590.1.1	Tomato	nucleus	39.53	60.16
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	26.7	47.66
GSMUA_AchrUn_...	Banana	plasma membrane	69.11	44.44
EER95053	Sorghum	plastid	32.72	28.67
EER93438	Sorghum	nucleus	25.65	25.59

Protein Annotations

MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	UniProt:A0A1B6PFK1	GO:GO:0000003	GO:GO:0000166	GO:GO:0000737
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009553
GO:GO:0009555	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0048316	GO:GO:0051026
GO:GO:0051321	EnsemblPlants:KXG24464	ProteinID:KXG24464	ProteinID:KXG24464.1	InterPro:Meiotic_Spo11	PFAM:PF04406
PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF1	EnsemblPlantsGene:SORBI_3007G046000	SUPFAM:SSF56726
InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI00081AC1AC	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:4629494..4632790

Molecular Weight (calculated)

42513.9 Da

IEP (calculated)

8.654

GRAVY (calculated)

0.090

Length

382 amino acids

Sequence
(BLAST)

001: MAEANVAAAS LFGADSRLCS ADILAPPEVR ARIEVAVLNF LAALASPSSP AISVLPLISR SSANCSLRSG LLNDVSSVYL SHTFCKRSLM HNPKAFVRVW
101: KVMEMCYKIL GEGKLVHQRE LFYKLLSDSP KYFSCQRHVN QAIQDVVSLL RCTRQSLGVM ASSRGALIGR LVLHEPDEEQ IDCSILGASG HAITGDLNLL
201: SKLNLSSDAR YIIVVEKDAI FQRLAEDRLY NQLPCILITA KGYPDIATRF ILHRLSQTFP NMPIFALVDW NPAGLAIMCT YKYGSISMGL ESYRYACNVK
301: WLGMRGDDLQ LIPESAFQVL KPRDLQIAKS LLSSKFLQES HRAELTLMVE KGKRADIEAL YSHGFDYLGK YIARKIVQGD YI

Best Arabidopsis Sequence Match ( AT1G63990.1 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.