CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU76853

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	OQU76853	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0752200-01	Rice	nucleus	83.81	84.25
TraesCS5D01G401100.1	Wheat	nucleus	78.85	78.04
TraesCS5B01G396300.1	Wheat	nucleus	78.07	77.46
TraesCS5A01G391400.2	Wheat	nucleus	78.59	75.44
VIT_19s0015g00280.t01	Wine grape	cytosol	57.7	61.22
KRH73898	Soybean	cytosol	55.61	58.04
CDY43366	Canola	cytosol	53.79	56.91
AT3G13170.1	Thale cress	cytosol	53.52	56.63
CDY24207	Canola	cytosol	53.52	56.63
Bra039374.1-P	Field mustard	cytosol	53.0	56.08
Solyc07g065440.2.1	Tomato	nucleus	20.1	52.38
PGSC0003DMT400057070	Potato	mitochondrion	24.8	51.63
GSMUA_Achr10P...	Banana	plasma membrane	25.07	51.61
Solyc07g065430.2.1	Tomato	cytosol	33.42	33.42
EER95053	Sorghum	plastid	29.5	25.92
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	25.59	25.65

Protein Annotations

MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	EntrezGene:8085927	UniProt:C5X098	EnsemblPlants:EER93438	ProteinID:EER93438
ProteinID:EER93438.1	GO:GO:0000003	GO:GO:0000166	GO:GO:0000228	GO:GO:0000706	GO:GO:0000724
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918
GO:GO:0004518	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0007049
GO:GO:0007129	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016889	GO:GO:0042138	GO:GO:0051026	InterPro:Meiotic_Spo11
PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	EnsemblPlantsGene:SORBI_3001G087000
SUPFAM:SSF56726	unigene:Sbi.2086	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11
UniParc:UPI0001A82D2F	RefSeq:XP_002466440.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6742827..6747399

Molecular Weight (calculated)

44011.6 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.085

Length

383 amino acids

Sequence
(BLAST)

001: MAGRDKRRRA APLEGDEQQL RRRQEEAALL LRRIKGLVRW VVEEVAAGRS PSIVLHRYRN YCSAADSASP SPCACSYDVP VGTDVLSLLH NDYHTSRLNV
101: LLRVLLVVQK LLQQNKHCSK RDIYYMYPSI FVEVAVVDRA INDICILLKC SRHNLNVVPV VKGLVMGWIR FVEGEKKVYC ITNVNAAFSI PVDIEAIKDV
201: VSVAHYILVV EKETVFQRLA NDKFCERNRC IVITGRGYPD IPTRRFLRYL VEQLHLPAYC LVDSDPYGFD ILATYKFGSL QLAHDANLLR VPDIRWLGVF
301: TSDFEEYCLP DCCLLHLSPE DRRKAERILA RCYLHREVPE WRSELEAMLQ KGVKFEIEAL SANSISFLSD EYIPQKIKQG MHL

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.