Factsheet for Bra039374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000733.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	Bra000733.1-P	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43366	Canola	cytosol	99.17	99.17
AT3G13170.1	Thale cress	cytosol	88.67	88.67
VIT_19s0015g00280.t01	Wine grape	cytosol	72.38	72.58
KRH73898	Soybean	cytosol	67.96	67.03
Solyc07g065440.2.1	Tomato	nucleus	26.24	64.63
GSMUA_Achr10P...	Banana	nucleus	19.61	64.55
PGSC0003DMT400057070	Potato	mitochondrion	31.49	61.96
Os03t0752200-01	Rice	nucleus	56.08	53.28
EER93438	Sorghum	nucleus	56.08	53.0
TraesCS5B01G396300.1	Wheat	nucleus	56.08	52.59
TraesCS5D01G401100.1	Wheat	nucleus	55.8	52.2
GSMUA_Achr10P...	Banana	plasma membrane	26.24	51.08
TraesCS5A01G391400.2	Wheat	nucleus	56.08	50.88
Solyc07g065430.2.1	Tomato	cytosol	38.67	36.55
Bra009564.1-P	Field mustard	nucleus	33.7	28.44
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	26.24	25.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	EnsemblPlantsGene:Bra039374	EnsemblPlants:Bra039374.1	EnsemblPlants:Bra039374.1-P
GO:GO:0000003	GO:GO:0000166	GO:GO:0000724	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950
GO:GO:0007049	GO:GO:0007129	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0042138	GO:GO:0051026	InterPro:IPR036388	UniProt:M4FE53
InterPro:Meiotic_Spo11	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3
SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI000253E933
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT3G13170 (E=1e-182) ATSPO11-1 | ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic

Coordinates

chrScaffold000164:-:175929..178420

Molecular Weight (calculated)

41845.9 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.181

Length

362 amino acids

Sequence
(BLAST)

001: MEGNFQISET TNLLRKIKEF TRSIVEDLAE GKSPEISINR FRNYCNDPEA DCFCSSDEPK GREILTLRKR SQTYRIDMLL RVLLIVQQLL QENRHGSKRD
101: IYYMHPSAFK AQSAVDRAIA DICILFQCSR YSLNVVSVGN GLVMGWLKFR EAGRKFDCLS SLNTAFPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV VTGRGYPDVS TRRFLRLLME KLQLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP EMKWLGAFPS DSDIYGVPQQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRSEGS FH

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.