Factsheet for Solyc07g065430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114040.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	Solyc03g114040.2.1	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	17.49	60.91
VIT_19s0015g00280.t01	Wine grape	cytosol	39.43	41.83
KRH73898	Soybean	cytosol	38.38	40.05
CDY43366	Canola	cytosol	36.81	38.95
Bra039374.1-P	Field mustard	cytosol	36.55	38.67
AT3G13170.1	Thale cress	cytosol	36.55	38.67
CDY24207	Canola	cytosol	36.03	38.12
EER93438	Sorghum	nucleus	33.42	33.42
Os03t0752200-01	Rice	nucleus	33.16	33.33
TraesCS5B01G396300.1	Wheat	nucleus	32.64	32.38
TraesCS5D01G401100.1	Wheat	nucleus	32.38	32.04
TraesCS5A01G391400.2	Wheat	nucleus	32.64	31.33
GSMUA_Achr10P...	Banana	plasma membrane	10.71	22.04
PGSC0003DMT400057070	Potato	mitochondrion	7.57	15.76
Solyc08g081590.1.1	Tomato	nucleus	6.01	9.16
Solyc09g007210.2.1	Tomato	nucleus	5.74	8.21
Solyc07g065440.2.1	Tomato	nucleus	0.52	1.36

Protein Annotations

Gene3D:3.30.70.100	Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000003	GO:GO:0000228	GO:GO:0000706
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918
GO:GO:0004518	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006810	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016889	GO:GO:0030001	GO:GO:0042138	GO:GO:0046872	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:K4CHM1	InterPro:Meiotic_Spo11	PFAM:PF00403	PRINTS:PR01550
PRINTS:PR01551	PFscan:PS50846	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF55008	SUPFAM:SSF56726
EnsemblPlantsGene:Solyc07g065430.2	EnsemblPlants:Solyc07g065430.2.1	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI000276AC53
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:67188261..67193112

Molecular Weight (calculated)

43484.5 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.379

Length

383 amino acids

Sequence
(BLAST)

001: MGWLRYVESG RKIDCISNPN TAYPIPVLVE EVDDIISVAQ YVIVVEKESV FQRLGRGYPD VPTRRFLRLL IDKLHLPVYG LVDCDPYGFD ILTTYKFGSL
101: QMAYDATFLR VSEIQWLGVF VQDCDNYSIP QQCLLPLTAE DKRKIEAMLP RCYLQREVPQ WRFELELLLH KGVKFEIEAL SVHSLTFLSH EYLPSKIHNG
201: GKIVDVHCDA CKMKMVDVLS SICGVYSVTI DSEDGTAKIS GEVDPNLLLR ALSRSGLGNH AEVKWVRLKH PMLSNSHMTD GYGSYNHGYG SYNHGYGSHN
301: HGYGSYNPGY GYNSYGHGHG HGHGYSSIGG PFMQRRSLPE YNYGYEGHHN YQYPFRGTAQ DSYATNYYSG ALPSPRPYNS YYM

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.