Factsheet for AT3G13170.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039374.1-P	Field mustard	cytosol	88.67	88.67
CDY24207	Canola	cytosol	88.67	88.67
CDY43366	Canola	cytosol	88.67	88.67
VIT_19s0015g00280.t01	Wine grape	cytosol	71.27	71.47
KRH73898	Soybean	cytosol	66.85	65.94
Solyc07g065440.2.1	Tomato	nucleus	25.41	62.59
GSMUA_Achr10P...	Banana	nucleus	18.78	61.82
PGSC0003DMT400057070	Potato	mitochondrion	30.94	60.87
Os03t0752200-01	Rice	nucleus	56.91	54.07
EER93438	Sorghum	nucleus	56.63	53.52
TraesCS5B01G396300.1	Wheat	nucleus	56.91	53.37
TraesCS5D01G401100.1	Wheat	nucleus	56.63	52.97
GSMUA_Achr10P...	Banana	plasma membrane	26.8	52.15
TraesCS5A01G391400.2	Wheat	nucleus	56.63	51.38
Solyc07g065430.2.1	Tomato	cytosol	38.67	36.55
AT5G02820.1	Thale cress	nucleus	32.6	27.63
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	26.24	24.8

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	EntrezGene:820506	UniProt:A0A178VGV5	ProteinID:AAK21002.1
ProteinID:AEE75304.1	EMBL:AJ251989	ArrayExpress:AT3G13170	EnsemblPlantsGene:AT3G13170	RefSeq:AT3G13170	TAIR:AT3G13170
RefSeq:AT3G13170-TAIR-G	EnsemblPlants:AT3G13170.1	TAIR:AT3G13170.1	Symbol:ATSPO11-1	ProteinID:BAB01408.1	EMBL:BT028955
GO:GO:0000003	GO:GO:0000166	GO:GO:0000228	GO:GO:0000724	GO:GO:0000737	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918	GO:GO:0004518	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0007049	GO:GO:0007129
GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016853	GO:GO:0016889	GO:GO:0042138	GO:GO:0046872	GO:GO:0051026
GO:GO:0051321	GO:GO:0061505	InterPro:IPR036388	InterPro:Meiotic_Spo11	RefSeq:NP_187923.1	ProteinID:OAP04132.1
PFAM:PF04406	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081
PO:PO:0004507	PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009046
PO:PO:0009052	PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	UniProt:Q9M4A2
SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI00000A410A
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]

Coordinates

chr3:-:4231395..4234206

Molecular Weight (calculated)

41806.1 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.148

Length

362 amino acids

Sequence
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.